User:Karmella Haynes/Notebook/PcTF Genomics/2013/01/05: Difference between revisions
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* ChIP seq analysis: bird's eye view of H3K27me3 enrichment | * ChIP seq analysis: bird's eye view of H3K27me3 enrichment | ||
---- | ---- | ||
'''H3K27me3 enrichment'''<br> | '''H3K27me3 enrichment'''<br> | ||
* Completed H3K27me3 (lane | * Completed H3K27me3 (lane 6) "BAM --> assembly" workflow | ||
* Open in SeqMan pro to explore known silenced vs. active genes | * Open in SeqMan pro to explore known silenced vs. active genes | ||
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| TBP || chr 6 || active || ~160 | | TBP || chr 6 || active || ~160 | ||
|- | |- | ||
| ACTB || chr 7 || active || | | ACTB || chr 7 || active || ~180 | ||
|- | |- | ||
| GUSB || chr 7 || active || | | GUSB || chr 7 || active || ~160 | ||
|- | |- | ||
| PPIA || chr 7 || active || | | PPIA || chr 7 || active || ~90 | ||
|- | |- | ||
| GAPDH || chr 12 || active || | | GAPDH || chr 12 || active || ~90 | ||
|- | |- | ||
| B2M || chr 15 || active || | | B2M || chr 15 || active || 0 | ||
|- | |- | ||
| G6PD || chr | | G6PD || chr X || active || ~130 | ||
|- | |- | ||
| HPRT1 || chr X (24) || active || | | HPRT1 || chr X (24) || active || ~150 | ||
|- | |- | ||
| PGK1 || chr X (24) || active || | | PGK1 || chr X (24) || active || ~240 | ||
|- | |- | ||
| CDKN2A || chr9 || silent (H3K27me3+) || | | CDKN2A || chr9 || silent (H3K27me3+) || ~90 | ||
|- | |- | ||
| MMP12 || chr11 || silent (H3K27me3+) || | | MMP12 || chr11 || silent (H3K27me3+) || ~18 | ||
|- | |- | ||
| MYT1 || chr20 || silent (H3K27me3+) || | | MYT1 || chr20 || silent (H3K27me3+) || '''~270''' | ||
|- | |- | ||
| OLIG1 || chr21 || silent (H3K27me3+) || | | OLIG1 || chr21 || silent (H3K27me3+) || 0 | ||
|- | |- | ||
| OLIG2 || chr21 || silent (H3K27me3+) || | | OLIG2 || chr21 || silent (H3K27me3+) || ~130 | ||
|} | |} | ||
Revision as of 18:07, 6 January 2013
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01/05/13
H3K27me3 enrichment
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