Difference between revisions of "User:Karmella Haynes/Notebook/PcTF Genomics/2012/12/26"

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Workflow
 
Workflow
* Go to UCSC genome browser. Search for gene. Get coordinates.
+
* Go to the [http://genome.ucsc.edu/cgi-bin/hgGateway UCSC genome browser]. Select Feb. 2009 GRCh37/hg19.
 +
* Search for the gene by name. Get coordinates
  
 
1. CDKN2A,  
 
1. CDKN2A,  

Revision as of 14:43, 26 December 2012

Owwnotebook icon.pngPc-TF Genomics <html><img src="/images/9/94/Report.png" border="0" /></html> Main project page
<html><img src="/images/c/c3/Resultset_previous.png" border="0" /></html>Previous entry<html>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</html>Next entry<html><img src="/images/5/5c/Resultset_next.png" border="0" /></html>


12/26/12

  • ChIP-seq enrichment: PcTF vs. PcTF mock for select genes

ChIP: PcTF vs. PcTF mock

  • Completed PcTF (lane 1) and PcTF mock (lane 2) BAM --> assembly workflow
  • Open in SeqMan pro to see raw values for four genes from 2011 paper.

Workflow

  • Go to the UCSC genome browser. Select Feb. 2009 GRCh37/hg19.
  • Search for the gene by name. Get coordinates

1. CDKN2A,