User:Karmella Haynes/Notebook/PcTF Genomics/2012/12/26: Difference between revisions

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==mm/dd/yy==
==12/26/12==
<!-- Precede finished items with a checkmark &#x2713; -->
<!-- Precede finished items with a checkmark &#x2713; -->
* ChIP-seq enrichment: PcTF vs. PcTF mock for select genes
* ChIP-seq enrichment: PcTF vs. PcTF mock for select genes
Line 16: Line 16:
* Completed PcTF (lane 1) and PcTF mock (lane 2) BAM --> assembly workflow
* Completed PcTF (lane 1) and PcTF mock (lane 2) BAM --> assembly workflow
* Open in SeqMan pro to see raw values for four genes from 2011 paper.
* Open in SeqMan pro to see raw values for four genes from 2011 paper.
Workflow
* Go to UCSC genome browser. Search for gene. Get coordinates.


1. CDKN2A,  
1. CDKN2A,  


{| class="wikitable" border="0" cellspacing="3" <!-- Rxn. table -->
|-valign="top"
| <u>Reagent</u> || <u>Volume</u>
|-
| reagent 1 || # μL
|-
| reagent 2 || #
|-
| reagent 3 || #
|-
| reagent 4 || #
|-
| dH<sub>2</sub>O || #
|-
| &nbsp; || # μL
|}
--> Reaction conditions




Revision as of 15:41, 26 December 2012

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12/26/12

  • ChIP-seq enrichment: PcTF vs. PcTF mock for select genes

ChIP: PcTF vs. PcTF mock

  • Completed PcTF (lane 1) and PcTF mock (lane 2) BAM --> assembly workflow
  • Open in SeqMan pro to see raw values for four genes from 2011 paper.

Workflow

  • Go to UCSC genome browser. Search for gene. Get coordinates.

1. CDKN2A,




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