User:Karmella Haynes/Notebook/PcTF Genomics

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Illumina ChIP-seq

  • ChIP DNA prep for Illumina:
  • Fasta --> BAM files: Mark Teng from the Dinu lab (TGEN)
  • Enrichment analysis (DNASTAR software)
    • BAM --> peaks/ enrichment histograms workflow 12/13/2012
    • BAM --> wig files for UCSC browser workflow 01/07/2013



Cell Type Study

  • Carly Hom - Express PcTF (KAH126) in K-562 and SK-N-SH


PcTF-Reporter Activation

  • Measure range of PcTF expression in transiently transfected cells - flow cytometry, 06/02/13


Synthetic Repression

  • Gal4-EED/luc staining experiments


Recent changes

18 October 2017

     11:54 

(User creation log). .

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     11:54  BME100 f2017:Group8 W1030 L4‎ (diff | hist) . . (+179). . Elizabeth White (talk | contribs) (Research and Development)

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(cur | prev) . . (+10). . Alec McCall (talk | contribs) (SNP Information & Primer Design)

     

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(cur | prev) . . (-5). . Alivia Ankrum (talk | contribs) (SNP Information & Primer Design)

     

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(cur | prev) . . (-4). . Alivia Ankrum (talk | contribs) (Apolipoprotein-E)

     

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(cur | prev) . . (+1). . Alivia Ankrum (talk | contribs) (What does APOE stand for?)

     

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(cur | prev) . . (+3). . Alec McCall (talk | contribs) (Research and Development)

     

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(cur | prev) . . (-1). . Alivia Ankrum (talk | contribs) (SNP Information & Primer Design)

     

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BME100 f2017:Group15 W1030 L4‎‎ (3 changes | history) . . (+676). . [Kylie I. Mercer‎ (3×)]

     

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(cur | prev) . . (+3). . Kylie I. Mercer (talk | contribs) (Lab B: Disease SNP - Specific Primer Design)

     

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     11:52  BME100 f2017:Group2 W1030 L4‎ (diff | hist) . . (+64). . Kaitlyn Nielsen (talk | contribs) (LAB 4 WRITE-UP)

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(Upload log). .

[Kaitlyn Nielsen‎; Jacob Tomas Harrison Haye‎ (3×)]

     

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. . Kaitlyn Nielsen (talk | contribs) uploaded File:Bme100labgroup2wedpb.png

     

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. . Jacob Tomas Harrison Haye (talk | contribs) uploaded a new version of File:Spider-man.jpg

     

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. . Jacob Tomas Harrison Haye (talk | contribs) uploaded a new version of File:Spider-man.jpg

     

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. . Jacob Tomas Harrison Haye (talk | contribs) uploaded File:Spider-man.jpg

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BME100 f2017:Group10 W1030 L4‎‎ (3 changes | history) . . (+922). . [Adrienne L. Parkinson‎ (3×)]

     

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     11:50  BME100 f2017:Projects4‎ (diff | hist) . . (0). . Karmella Haynes (talk | contribs)
     11:50  BME100 f2017:Group13 W1030 L4‎ (diff | hist) . . (+254). . Brenna S. Toshner (talk | contribs) (Protocol)

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BME100 f2017:Group16 W1030 L4‎‎ (2 changes | history) . . (-28). . [Hannah Correa‎ (2×)]

     

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