User:Karmella Haynes/Notebook/BioBrick cloning/2013/01/17

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01/17/13

  • Minipreps: check Golden Gate assembly clones (trial 3)


Minipreps

  • Check with E/P digests
  • Minipreps from colonies on Plate #2 (Promega home-made ligation buffer trial)
Reagent Volume Expected:
1. Plate 2-1 = 2000 (v), 2706 (i)
2. Plate 2-2 = 2000 (v), 2706 (i)
3. Plate 2-3 (red) = 2000 (v), 2706 (i)

4. Plate 2-4 = 2000 (v), 2706 (i)
5. pSB1A3+RFP = 2000 (v), ~1200 (i)
6. hPCD/V0120 = 3200 (v), 186 (i)
7. BL01 = 3200 (v), 2520 (i)
 E/P digests
15 μL/lane; 1% agarose; Ladder
DNA(plasmid) 3.0 μL
10X buffer 1.5
EcoRI 1.0
PstI 1.0
dH2O 9.5
  15 μL --> 37°C/ ~15 min.

Conclusions

  • Success! (1, 2, & 4) Bands match expected size for vector pSB1A3 (not old vector V0120) and for assembled insert: hPCD (186) + BL01 (2520) = 2706 (visibly larger than BL01 band)
  • Transferring inserts from V0120 to pSB1A3 is probably a good idea since several internal BsmBI sites might destroy any template background
  • Use BsmBI Type IIS method to assemble all the things!


1/23/13 Sequencing confirmation (DNASU)

  1. ggPro-1, VF2 - correct sequence, scarless junction between hPCD and BL01
  2. ggPro-1, VR - correct sequence for SP1AB of BL01
  3. ggPro-2, VF2 - matches ggPro-1 (BLAST)
  4. ggPro-1, VR - matches ggPro-1 (BLAST)
  5. ggPro-4, VF2 - matches ggPro-1 (BLAST)
  6. ggPro-1, VR - matches ggPro-1 (BLAST)



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