User:Jose Fabricio Lopez/Notebook/GEDF/2012/10/11: Difference between revisions

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(Autocreate 2012/10/11 Entry for User:Jose_Fabricio_Lopez/Notebook/GEDF)
 
 
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==Trichoderma & P. vulgaris interaction==
==Trichoderma & P. vulgaris interaction==
====Things to do====
====Things to do====
 
*Collect vials from volatiles [[User:Jose Fabricio Lopez/Notebook/GEDF/2012/10/10#Things to do| yesterday]].
====Things done====
====Things done====
*Collected.
===Loogbook===
*VOCs collected, not measured yet.
*Plants were dried 72°C 4 hrs and measured.
{| {{table}}
| align="center" style="background:#f0f0f0;"|
| align="center" style="background:#f0f0f0;"|'''B.L'''
| align="center" style="background:#f0f0f0;"|'''S.L'''
| align="center" style="background:#f0f0f0;"|'''W.L'''
| align="center" style="background:#f0f0f0;"|'''W.S'''
|-
| align="center" style="background:#f0f0f0;"|'''C1'''
| 5||3||1.12gr||.61gr
|-
| align="center" style="background:#f0f0f0;"|'''C2'''
| 5||2||.87gr||.49gr
|-
| align="center" style="background:#f0f0f0;"|'''C3'''
| 5||2||1.2gr||.71gr
|-
| align="center" style="background:#f0f0f0;"|'''T1'''
| 6||3||1.22gr||.75gr
|-
| align="center" style="background:#f0f0f0;"|'''T2'''
| 6||3||.98gr||.53gr
|-
| align="center" style="background:#f0f0f0;"|'''T3'''
| 6||3||1.28gr||1.04gr
|}


===Loogbook===
*TotalW Control: 4.99gr
*TotalW T.at:    5.74gr
We need a bigger sample.


==Intergenic sequences in T.atroviride==
==Intergenic sequences in T.atroviride==
====Things to do====
====Things to do====
 
*Compare Coordinates of augustus pred with .gtf.
====Things done====
====Things done====
 
*Comparing.
===Loogbook===
===Loogbook===
*As I can see and the results shows, prediction with JGI vs 454 is indifferent.


==Extras==
==Extras==


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Latest revision as of 21:57, 11 October 2012

Gene Expression and Development in Fungi <html><img src="http://openwetware.org/images/9/94/Report.png" border="0" /></html> Main project page
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Trichoderma & P. vulgaris interaction

Things to do

Things done

  • Collected.

Loogbook

  • VOCs collected, not measured yet.
  • Plants were dried 72°C 4 hrs and measured.
B.L S.L W.L W.S
C1 5 3 1.12gr .61gr
C2 5 2 .87gr .49gr
C3 5 2 1.2gr .71gr
T1 6 3 1.22gr .75gr
T2 6 3 .98gr .53gr
T3 6 3 1.28gr 1.04gr
  • TotalW Control: 4.99gr
  • TotalW T.at: 5.74gr

We need a bigger sample.

Intergenic sequences in T.atroviride

Things to do

  • Compare Coordinates of augustus pred with .gtf.

Things done

  • Comparing.

Loogbook

  • As I can see and the results shows, prediction with JGI vs 454 is indifferent.

Extras
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