Difference between revisions of "User:Jose Fabricio Lopez/Notebook/GEDF/2012/10/11"

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(Loogbook)
 
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===Loogbook===
 
===Loogbook===
 
*VOCs collected, not measured yet.
 
*VOCs collected, not measured yet.
*Plants were measured.
+
*Plants were dried 72°C 4 hrs and measured.
<table id="Table 1" border="1" cellpadding="3" cellspacing="0">
+
{| {{table}}
<tr>
+
| align="center" style="background:#f0f0f0;"|
<td rowspan=1 colspan=1></td>
+
| align="center" style="background:#f0f0f0;"|'''B.L'''
<th><tt>BigL</tt></th>
+
| align="center" style="background:#f0f0f0;"|'''S.L'''
<th><tt>SmallL</tt></th>
+
| align="center" style="background:#f0f0f0;"|'''W.L'''
<th><tt>W.L.</tt></th>
+
| align="center" style="background:#f0f0f0;"|'''W.S'''
<th><tt>W.S.</tt></th>
+
|-
</tr>
+
| align="center" style="background:#f0f0f0;"|'''C1'''
<tr>
+
| 5||3||1.12gr||.61gr
<th><tt>C1</tt></th>
+
|-
<th><tt>5</tt></th>
+
| align="center" style="background:#f0f0f0;"|'''C2'''
<th><tt>3</tt></th>
+
| 5||2||.87gr||.49gr
<th><tt>1.12gr</tt></th>
+
|-
<th><tt>.61gr</tt></th>
+
| align="center" style="background:#f0f0f0;"|'''C3'''
</tr>
+
| 5||2||1.2gr||.71gr
<tr>
+
|-
<th><tt>C2</tt></th>
+
| align="center" style="background:#f0f0f0;"|'''T1'''
<th><tt>5</tt></th>
+
| 6||3||1.22gr||.75gr
<th><tt>2</tt></th>
+
|-
<th><tt>.87gr</tt></th>
+
| align="center" style="background:#f0f0f0;"|'''T2'''
<th><tt>.49gr</tt></th>
+
| 6||3||.98gr||.53gr
</tr>
+
|-
<tr>
+
| align="center" style="background:#f0f0f0;"|'''T3'''
<th><tt>C3</tt></th>
+
| 6||3||1.28gr||1.04gr
<th><tt>5</tt></th>
+
|}
<th><tt>2</tt></th>
+
 
<th><tt>1.2gr</tt></th>
+
*TotalW Control: 4.99gr
<th><tt>.71gr</tt></th>
+
*TotalW T.at:    5.74gr
</tr>
+
We need a bigger sample.
<tr>
+
 
<th><tt>T1</tt></th>
 
<th><tt>6</tt></th>
 
<th><tt>3</tt></th>
 
<th><tt>1.22gr</tt></th>
 
<th><tt>.75gr</tt></th>
 
</tr>
 
<tr>
 
<th><tt>T2</tt></th>
 
<th><tt>6</tt></th>
 
<th><tt>3</tt></th>
 
<th><tt>.98gr</tt></th>
 
<th><tt>.53gr</tt></th>
 
</tr>
 
<tr>
 
<th><tt>T3</tt></th>
 
<th><tt>6</tt></th>
 
<th><tt>3</tt></th>
 
<th><tt>1.28gr</tt></th>
 
<th><tt>1.04gr</tt></th>
 
</tr>
 
 
==Intergenic sequences in T.atroviride==
 
==Intergenic sequences in T.atroviride==
 
====Things to do====
 
====Things to do====
 
+
*Compare Coordinates of augustus pred with .gtf.
 
====Things done====
 
====Things done====
 
+
*Comparing.
 
===Loogbook===
 
===Loogbook===
 +
*As I can see and the results shows, prediction with JGI vs 454 is indifferent.
  
 
==Extras==
 
==Extras==
  
 
<!-- ##### DO NOT edit below this line unless you know what you are doing. ##### -->
 
<!-- ##### DO NOT edit below this line unless you know what you are doing. ##### -->

Latest revision as of 20:57, 11 October 2012

Fungi.jpg Gene Expression and Development in Fungi <html><img src="http://openwetware.org/images/9/94/Report.png" border="0" /></html> Main project page
<html><img src="/images/c/c3/Resultset_previous.png" border="0" /></html>Previous entry<html>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</html>Next entry<html><img src="/images/5/5c/Resultset_next.png" border="0" /></html>

Trichoderma & P. vulgaris interaction

Things to do

Things done

  • Collected.

Loogbook

  • VOCs collected, not measured yet.
  • Plants were dried 72°C 4 hrs and measured.
B.L S.L W.L W.S
C1 5 3 1.12gr .61gr
C2 5 2 .87gr .49gr
C3 5 2 1.2gr .71gr
T1 6 3 1.22gr .75gr
T2 6 3 .98gr .53gr
T3 6 3 1.28gr 1.04gr
  • TotalW Control: 4.99gr
  • TotalW T.at: 5.74gr

We need a bigger sample.

Intergenic sequences in T.atroviride

Things to do

  • Compare Coordinates of augustus pred with .gtf.

Things done

  • Comparing.

Loogbook

  • As I can see and the results shows, prediction with JGI vs 454 is indifferent.

Extras