User:Jose Fabricio Lopez/Notebook/GEDF/2012/10/02: Difference between revisions
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==Trichoderma & P. vulgaris interaction== | ==Trichoderma & P. vulgaris interaction== | ||
====Things to do==== | ====Things to do==== | ||
*Capture VOCs | |||
====Things done==== | ====Things done==== | ||
*Abort capture. | |||
===Loogbook=== | ===Loogbook=== | ||
*Many beans are contaminated with fungi. :( sadly we need to wait for a new opportunity and new set to measuer VOCs. | |||
==Intergenic sequences in T.atroviride== | ==Intergenic sequences in T.atroviride== | ||
====Things to do==== | ====Things to do==== | ||
*Analyze 20 matches. | |||
*Correct mistakes in coordinates in 0bp file. run Blast to overview check. | |||
*Run analysis again with FilteringBLASTsFromAugustusPredictions.R in /Scripts & Data. | |||
====Things done==== | ====Things done==== | ||
*Analyzed. | |||
*Corrected. | |||
*Re-analyzing. | |||
===Loogbook=== | ===Loogbook=== | ||
*Just 20 hits. Seems there is something wrong. I see the coordinates in 0bp file and they are wrong!!! in file GettingSequences.R (I cant find the Script were I extract 0,480,1020,770), but this one works. And I create the file IntergenicFastaCorrected.fas (extracts just 0bp seqs). | |||
*Re-analysing. | |||
==Extras== | ==Extras== | ||
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Revision as of 15:13, 2 October 2012
Gene Expression and Development in Fungi | <html><img src="http://openwetware.org/images/9/94/Report.png" border="0" /></html> Main project page <html><img src="/images/c/c3/Resultset_previous.png" border="0" /></html>Previous entry<html> </html>Next entry<html><img src="/images/5/5c/Resultset_next.png" border="0" /></html> |
Trichoderma & P. vulgaris interactionThings to do
Things done
Loogbook
Intergenic sequences in T.atrovirideThings to do
Things done
Loogbook
Extras |