User:Jarle Pahr/Metabolic engineering: Difference between revisions
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=Bibliography= | =Bibliography= | ||
Non-fermentative pathways for synthesis of | |||
branched-chain higher alcohols as biofuels: http://www.nature.com/nature/journal/v451/n7174/full/nature06450.html | |||
Metabolic engineeringof Escherichia coli for theproductionofsuccinate | |||
from glycerol: http://www.sciencedirect.com/science/article/pii/S1096717610000698 | |||
Microbial production of fatty-acid-derived fuels and | |||
chemicals from plant biomass: http://www.nature.com/nature/journal/v463/n7280/full/nature08721.html | |||
http://www.ncbi.nlm.nih.gov/pubmed/21241816 | |||
ePathBrick: A Synthetic Biology Platform for Engineering Metabolic Pathways in E. coli | ePathBrick: A Synthetic Biology Platform for Engineering Metabolic Pathways in E. coli | ||
Revision as of 09:12, 15 July 2013
Notes on metabolic engineering:
sb6.biobricks.org/poster/fitness-and-flux-in-bacterial-metabolism/
Tools
Copeland 2012. Computational tools for metabolic engineering: http://www.sciencedirect.com/science/article/pii/S1096717612000250
Keasling 2012. Synthetic biology and the development of tools for metabolic engineering: http://www.sciencedirect.com/science/article/pii/S1096717612000055
D. Chandran, F.T. Bergmann, H.M. Sauro. Computer-aided design of biological circuits using TinkerCell.
KEGG:
MetaCyc:
Model SEED:
BiGG:
Persons and researchg groups
Gregory Stephanopoulos
Jay D Keasling.
Journals
Metabolic Engineering: http://www.journals.elsevier.com/metabolic-engineering/
Bibliography
Non-fermentative pathways for synthesis of branched-chain higher alcohols as biofuels: http://www.nature.com/nature/journal/v451/n7174/full/nature06450.html
Metabolic engineeringof Escherichia coli for theproductionofsuccinate
from glycerol: http://www.sciencedirect.com/science/article/pii/S1096717610000698
Microbial production of fatty-acid-derived fuels and
chemicals from plant biomass: http://www.nature.com/nature/journal/v463/n7280/full/nature08721.html
http://www.ncbi.nlm.nih.gov/pubmed/21241816
ePathBrick: A Synthetic Biology Platform for Engineering Metabolic Pathways in E. coli
Synthetic biology devices as tools for metabolic engineering: http://www.sciencedirect.com/science/article/pii/S1369703X12000903
Parts plus pipes: Synthetic biology approaches to metabolic engineering: http://www.sciencedirect.com/science/article/pii/S1096717611001042
Martin, V. J. , Pitera, D. J. , Withers, S. T. , Newman, J. D. & Keasling, J. D. Engineering a mevalonate pathway in Escherichia coli for production of terpenoids. Nature Biotechnol. 21, 796–802 (2003
P.D. Karp, R. Caspi. A survey of metabolic databases emphasizing the MetaCyc family
