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Revision as of 15:18, 16 January 2007 by Ilya (talk | contribs) (Data storage)

Graduate student in Bioinformatics at Northeastern University working in Endy Lab at MIT.

Contact: [math]\mbox{ilyas}[/math]@[math]\mbox{}[/math]



Semantic Web Ontology for the Registry of Standard Biological Parts.


Mating pheromone response pathway analysis across yeast and related species




Software development

BioBricks aligner - aligns sequence reads (fragments) to Biobrick sequence

Lab computing


Data storage

  • Endy lab backup solutions page
  • MIT TSM Backup Service
    • TSM software (free to MIT community per site license)
    • Monthly service charge: $7.50 per month per computer
    • TSM software is available for Windows, Mac and Linux free from MIT
    • Backups are stored on one of the four TSM backup servers in building W91
    • Manual or Scheduled Backup
    • Old versions of current files and deleted files are kept for 30 days
    • Need a separate account for each computer to be backed up


Synthetic Biology


  • Biotool2Web: Creating Simple Web Interfaces for Bioinformatics Applications
  • Sedna is an open source XML-native database management system developed from scratch in C/C++ and Scheme
  • Aggregate Data utilizes AJAX-based "sliders" so survey takers can choose anywhere along a spectrum of opinion
  • CHM file viewers for non-Windows platforms
  • Tor: an anonymous Internet communication system
  • Wireshark: network protocol analyzer (successor to Ethereal)

Application servers

  • Whitebeam - open source; applications are written as a set of XML pages that contain embedded JavaScript


<html> <a href="" id="clustrMapsLink"><img src="" style="border:1px solid;" alt="Locations of visitors to this page" title="Locations of visitors to this page" id="clustrMapsImg" onError="this.onError=null; this.src=''; document.getElementById('clustrMapsLink').href=''" /> </a> </html>