User:Ilya

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Ilya Sytchev (Илья Сычёв) is a graduate student in Bioinformatics at Northeastern University working in Endy Lab at MIT.

Contact: @

Research

Current

Previous

Mating pheromone response pathway analysis across yeast and related species

Activities

OpenWetWare

Software development

BioBricks aligner - aligns sequence reads (fragments) to Biobrick sequence

Lab computing

Notes

Synthetic Biology

Software

  • Biotool2Web: Creating Simple Web Interfaces for Bioinformatics Applications
  • Sedna is an open source XML-native database management system developed from scratch in C/C++ and Scheme
  • Aggregate Data utilizes AJAX-based "sliders" so survey takers can choose anywhere along a spectrum of opinion
  • CHM file viewers for non-Windows platforms
  • Tor: an anonymous Internet communication system
  • Wireshark: network protocol analyzer (successor to Ethereal)
  • Babel - convert between various formats (Excel, JSON, N3, RDF/XML, etc)
  • Web 2.0-style buttons

Data visualization

  • Many Eyes - a site for sharing and commenting on visualizations by IBM
  • Data360
  • Swivel: YouTube for data - visualize and share your data with others

Application servers

  • Whitebeam - open source; applications are written as a set of XML pages that contain embedded JavaScript

Miscellaneous

  • <html><a href="javascript:location.href='https://libproxy.mit.edu/cgi-bin/ezpauth?url='+location.href">MIT proxy</a></html>: a bookmarklet to redirect your current browser page through MIT's Proxy, useful for browsing ACM Portal, etc. Drag it to your bookmarks toolbar, and click it on any page to view that page through the MIT proxy (via Jonathan Ragan-Kelley)
  • DNA Art
  • DNA 11
  • WEB2DNA

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