Difference between revisions of "User:Ilya"

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(Software)
(Current)
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===Current===
 
===Current===
[[Synthetic Biology:Semantic web ontology|Semantic Web Ontology]] for the [http://parts.mit.edu/ Registry of Standard Biological Parts].
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*[[Synthetic Biology:Semantic web ontology|Semantic Web Ontology]] for the [http://parts.mit.edu/ Registry of Standard Biological Parts]
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**[[Synthetic_Biology:Semantic_web_ontology/Notes|Notes]]
  
 
===Previous===
 
===Previous===

Revision as of 15:29, 13 February 2007

Graduate student in Bioinformatics at Northeastern University working in Endy Lab at MIT.

Contact: Failed to parse (MathML with SVG or PNG fallback (recommended for modern browsers and accessibility tools): Invalid response ("Math extension cannot connect to Restbase.") from server "https://api.formulasearchengine.com/v1/":): {\displaystyle \mbox{ilyas}} @Failed to parse (MathML with SVG or PNG fallback (recommended for modern browsers and accessibility tools): Invalid response ("Math extension cannot connect to Restbase.") from server "https://api.formulasearchengine.com/v1/":): {\displaystyle \mbox{mit.edu}}

Research

Current

Previous

Mating pheromone response pathway analysis across yeast and related species

Activities

OpenWetWare

Notes

Software development

BioBricks aligner - aligns sequence reads (fragments) to Biobrick sequence

Lab computing

Notes

Synthetic Biology

Software

  • Biotool2Web: Creating Simple Web Interfaces for Bioinformatics Applications
  • Sedna is an open source XML-native database management system developed from scratch in C/C++ and Scheme
  • Aggregate Data utilizes AJAX-based "sliders" so survey takers can choose anywhere along a spectrum of opinion
  • CHM file viewers for non-Windows platforms
  • Tor: an anonymous Internet communication system
  • Wireshark: network protocol analyzer (successor to Ethereal)
  • Swivel: YouTube for data - visualize and share your data with others
  • Many Eyes - a site for sharing and commenting on visualizations by IBM
  • Babel - convert between various formats (Excel, JSON, N3, RDF/XML, etc)
  • Web 2.0-style buttons

Application servers

  • Whitebeam - open source; applications are written as a set of XML pages that contain embedded JavaScript

Miscellaneous

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