Difference between revisions of "User:Ilya"

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(Lab computing)
(Software)
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*[http://wireshark.org/ Wireshark]: network protocol analyzer (successor to [http://www.ethereal.com/ Ethereal])
 
*[http://wireshark.org/ Wireshark]: network protocol analyzer (successor to [http://www.ethereal.com/ Ethereal])
 
*[http://www.swivel.com/ Swivel]: YouTube for data - visualize and share your data with others
 
*[http://www.swivel.com/ Swivel]: YouTube for data - visualize and share your data with others
 +
*[http://services.alphaworks.ibm.com/manyeyes/home Many Eyes] - a site for sharing and commenting on visualizations by IBM
  
 
===Application servers===
 
===Application servers===

Revision as of 14:13, 25 January 2007

Graduate student in Bioinformatics at Northeastern University working in Endy Lab at MIT.

Contact: [math]\mbox{ilyas}[/math]@[math]\mbox{mit.edu}[/math]

Research

Current

Semantic Web Ontology for the Registry of Standard Biological Parts.

Previous

Mating pheromone response pathway analysis across yeast and related species

Activities

OpenWetWare

Notes

Software development

BioBricks aligner - aligns sequence reads (fragments) to Biobrick sequence

Lab computing

Notes

Synthetic Biology

Software

  • Biotool2Web: Creating Simple Web Interfaces for Bioinformatics Applications
  • Sedna is an open source XML-native database management system developed from scratch in C/C++ and Scheme
  • Aggregate Data utilizes AJAX-based "sliders" so survey takers can choose anywhere along a spectrum of opinion
  • CHM file viewers for non-Windows platforms
  • Tor: an anonymous Internet communication system
  • Wireshark: network protocol analyzer (successor to Ethereal)
  • Swivel: YouTube for data - visualize and share your data with others
  • Many Eyes - a site for sharing and commenting on visualizations by IBM

Application servers

  • Whitebeam - open source; applications are written as a set of XML pages that contain embedded JavaScript

Miscellaneous

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