Difference between revisions of "User:Ilya"

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*[[Computing/Web2.0|Web 2.0]]
*[[Computing/Web2.0|Web 2.0]]
*[[User:Ilya/Digital_evolution|Digital evolution]]
*[[User:Ilya/Digital_evolution|Digital evolution]]
*[[http://web.mit.edu/network/ MIT Network and Infrastructure Team]] - network maps, etc
*[http://web.mit.edu/network/ MIT Network and Infrastructure Team] - network maps, etc
===Synthetic Biology===
===Synthetic Biology===

Revision as of 14:40, 21 December 2006

Graduate student in Bioinformatics at Northeastern University working in Endy Lab at MIT.

Contact: @



Semantic Web Ontology for the Registry of Standard Biological Parts.


Mating pheromone response pathway analysis across yeast and related species




Software development

BioBricks aligner - aligns sequence reads (fragments) to Biobrick sequence

Lab computing


Data storage

  • MIT TSM Backup Service
    • TSM software (free to MIT community per site license)
    • Monthly service charge: $7.50 per month per computer
    • TSM software is available for Windows, Mac and Linux free from MIT
    • Backups are stored on one of the four TSM backup servers in building W91
    • Manual or Scheduled Backup
    • Old versions of current files and deleted files are kept for 30 days
    • Need a separate account for each computer to be backed up


Synthetic Biology


  • Biotool2Web: Creating Simple Web Interfaces for Bioinformatics Applications
  • Sedna is an open source XML-native database management system developed from scratch in C/C++ and Scheme
  • Aggregate Data utilizes AJAX-based "sliders" so survey takers can choose anywhere along a spectrum of opinion
  • CHM file viewers for non-Windows platforms
  • Tor: an anonymous Internet communication system
  • Wireshark: network protocol analyzer (successor to Ethereal)

Application servers

  • Whitebeam - open source; applications are written as a set of XML pages that contain embedded JavaScript


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