Difference between revisions of "User:David K. Barclay/Notebook/Controlling Pancreas Cell Fate Using Transcription Factors/2014/04/12"

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==Promoters Bioinformatics==
 
==Promoters Bioinformatics==
 
===H3K27me3 markers TSS sites===
 
===H3K27me3 markers TSS sites===
 +
*Workflow Part 1
 
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Revision as of 12:24, 14 April 2014

Owwnotebook icon.png Cell Fate Switch by Synthetic Transcription Factors <html><img src="/images/9/94/Report.png" border="0" /></html> Main project page
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Promoters Bioinformatics

H3K27me3 markers TSS sites

  • Workflow Part 1
H3K27me3 Markers TSS sites
Chromosome Gene TSS+250 TSS-250 Signal
13 PDX1 28493908 28494408 85.24
6 GLP1R 39016307 39016807 20.72
8 MAFA 144509980 144510480 140.76
5 PCSK1 95725790 95726290 1
12 IAPP 21525552 21526052 2
20 KCNQ2 62031317 62031817 4

Table Browser Protocl (UCSC)

  1. Go to UCSC Table Browser http://genome.ucsc.edu/cgi-bin/hgTables?hgsid=356574357
  2. Clade to Mammal, Genome to Human, Assembly to Mar. 2006 (hg18)
  3. Track to UW Histone
  4. Region defined as TSS+250 and TSS-250 above
  5. Output format to "selected fields from primary and related tables." Click get output
  6. Select: chrom, chromStart, chromEnd, name and signalValue

Results

No results found, none of genes found with UW histone markers.