Difference between revisions of "Tregwiki:Main Page"

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Welcome to '''[[Tregwiki:Max|Msx's]] Wiki on Transcriptional Regulation'''. ([[Tregwiki:Max|who's max?]])
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Welcome to '''[[Tregwiki:Max|Max's]] Wiki on Transcriptional Regulation'''. ([[Tregwiki:Max|who's max?]])
  
 
''"Man is a tool-using Animal. Nowhere do you find him without tools; without tools he is nothing, with tools he is all." (Thomas Carlyle)''
 
''"Man is a tool-using Animal. Nowhere do you find him without tools; without tools he is nothing, with tools he is all." (Thomas Carlyle)''
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*Binding sites:
 
*Binding sites:
 
** Look up: In databases of known [[Tregwiki:Collected regulatory elements|Collected regulatory elements]]
 
** Look up: In databases of known [[Tregwiki:Collected regulatory elements|Collected regulatory elements]]
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** [[Tools for matrices|Visualize and compare your results]]
 
** Scan: [[Tregwiki:Scanning promotors|Scanning promotors]] or enhancers for binding site matrices or consensus sequences
 
** Scan: [[Tregwiki:Scanning promotors|Scanning promotors]] or enhancers for binding site matrices or consensus sequences
** Predict: [http://www.stud.uni-potsdam.de/~haussler/master Discover motifs], [[Tregwiki:Calculate statistics|Calculate statistics]] of DNA-words or [[[Tregwiki:Discover motif combinations|Discover motif combinations]]
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** Predict: [http://www.stud.uni-potsdam.de/~haussler/master Discover motifs], [[Tregwiki:Calculate statistics|Calculate statistics]] of DNA-words or [[Tregwiki:Discover motif combinations|Discover motif combinations]]
  
 
* [[Tregwiki:Recent bibliography|Recent papers on regulation]]
 
* [[Tregwiki:Recent bibliography|Recent papers on regulation]]

Latest revision as of 08:06, 4 March 2008

Welcome to Max's Wiki on Transcriptional Regulation. (who's max?)

"Man is a tool-using Animal. Nowhere do you find him without tools; without tools he is nothing, with tools he is all." (Thomas Carlyle)

I am collecting links related to bioinformatics and binding site prediction (Why is this a difficult problem?). There are usually many different solutions for every problem in bioinformatics. This list might shorten your mileage when choosing an appropriate one.

  • Meta-Websites that integrate promotor download, motif matching/discovery

There are a couple of Similar link collections on the web. Sometimes Gene Ontology related tools are useful when working with transcriptional regulation.