Talk:Wikiomics:BLAST tutorial

From OpenWetWare
Revision as of 07:43, 12 February 2010 by Darek Kedra (talk | contribs) (blastall switches)
Jump to: navigation, search

What are the parameters to use to limit the number of allignmets produced by blast for each query sequence?

I seem to remember it is '-b xxx' or something....

--Dan 14:21, 15 January 2010 (EST)

You are right, -b is the switch for blastall. Two relevant lines from blastall --help

  -v  Number of database sequences to show one-line descriptions for (V) [Integer]
    default = 500
  -b  Number of database sequence to show alignments for (B) [Integer]
    default = 250
  • darked 09:43, 12 February 2010 (EST):