Talk:20.109(S14):Phylogenetic and primer analyses (Day7)

Final sample-wide alignment files and trees

One representative from each sample-based group should post a .mas and .pdf file here when data are in final form. That way we'll all have quick access to the location sub-trees.

Sample #	Alignment file (.mas)	Tree file (.pdf)
252	Media:TR-alignment-partial1.mas	Media:TR-tree-partial1.pdf

T/R microbiota

Linking a file code: [[Media: filename.extension]] or optionally [[Media: filename.extension | description]].

Team Color	Team Member	Gull ID	Sequence 1 (txt)	Sequence 2 (txt)	Sequence 3 (txt)	Sequence 4 (txt)	Sequence 5 (txt)	Sequence 6 (txt)	Sequence 7 (txt)	Sequence 8 (txt)	Species overview (xlsx)	Alignment (mas)	Tree (pdf)
Red	AK	308	Media:TRRed308C1.txt	Media:TRRed308C2.txt	Media:TRRed308C3.txt	Media:TRRed308C4.txt		Media:TRRed308C6.txt		Media:TRRed308C8.txt	Media:TRRed308.xls
Red	LT	308		Media:TRRed308C2B.txt	Media:TRRed308C3B.txt	Media:TRRed308C4B.txt	Media:TRRed308C5B.txt	Media:TRRed308C6B.txt		Media:TRRed308C8B.txt	Media:TRRed308.xls
Orange	CT-Q	312
Orange	AN	308		Media: TROrange308AC2.txt	Media: TROrange308AC3.txt	Media: TROrange308AC4.txt	Media: TROrange308AC5.txt				Media: TROrange308AC.xlsx
Yellow
Yellow
Green	CB	304	Media: TRGreen304C1.txt	Media: TRGreen304C2.txt					Media: TRGreen304C7R.txt		Media: TRGreen304CB.xlsx	Media: TR-304-Alignment.mas	Media: TR-304-Tree.pdf
Green	CR	304			Media: TRGreen304C11.txt	Media: TRGreen304C12.txt	Media: TRGreen304C13.txt	Media: TRGreen304C14F.txt	Media: TRGreen304C15.txt		Media: TR_Green_304_C9-C15.xlsx	Media: TR-304-Alignment.mas	Media: TR-304-Tree.pdf
Blue	KT	304			Media: TRBlue304C3.txt							Media: TR-304-Alignment.mas	Media: TR-304-Tree.pdf
Blue	MG	252	N/A
Pink	RCB	252	Media: TRPink252C1.txt		Media: TRPink252C3.txt		Media: TRPink252C5.txt				Media: TR252Excel.xlsx
Pink	HMH / MG	252			Media: TRPink252C3B.txt	Media: TRPink252C4B.txt	Media: TRPink252C5B.txt	Media: TRPink252C6B.txt

W/F microbiota

Linking a file code: [[Media: filename.extension]] or optionally [[Media: filename.extension | description]].

Team Color	Team Member	Gull ID	Sequence 1 (txt)	Sequence 2 (txt)	Sequence 3 (txt)	Sequence 4 (txt)	Sequence 5 (txt)	Sequence 6 (txt)	Sequence 7 (txt)	Sequence 8 (txt)	Species overview (xlsx)	Alignment (mas)	Tree (pdf)
Red
Orange
Orange
Yellow
Yellow
Green
Green
Blue
Blue
Pink
Pink
Purple
Purple
Platinum
Platinum
White
White