Talk:20.109(S13):Phylogenetic analysis (Day7): Difference between revisions
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One representative from each sample-based group should post a .mas and .pdf file here when data are in final form. That way we'll all have quick access to the location sub-trees. | One representative from each sample-based group should post a .mas and .pdf file here when data are in final form. That way we'll all have quick access to the location sub-trees. | ||
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|709 | |709 | ||
| | |[[Media: 709-final-alignment.mas]] | ||
| | |[[Media: S13_709-final-tree.pdf]] | ||
|[[Media: S13-M1D7-709-extra-clones.xlsx | Agi's species]] | |||
|- | |- | ||
|712 | |712 |
Revision as of 14:11, 8 March 2013
General notes
I believe some groups are still in the process of reverse complementing inserts in the non-usual orientation.
Agi is in the process of trimming and analyzing four additional #709 clones prepped and sequenced yesterday -- looks as though only one will be good. I may not finish until after class today, circa 5 pm. Update: even later than that. I can do the final addition to an existing #709 .mas file if need be, also including samples from a student who has been ill.
Final sample-wide alignment files and trees
One representative from each sample-based group should post a .mas and .pdf file here when data are in final form. That way we'll all have quick access to the location sub-trees.
Sample # | Alignment file (.mas) | Tree file (.pdf) | |
702 | Media: Final_702_Alignment.mas | Media: Final_702_PhyloTree.pdf | |
709 | Media: 709-final-alignment.mas | Media: S13_709-final-tree.pdf | Agi's species |
712 | Media: Final_712_Alignment.mas | Media: Final_712_PhyloTree.pdf | |
716 | No clones worked | No clones worked | |
405 | Media: Final_405_Alignment.mas | Media: Final_405_PhyloTree.pdf | |
664 | Media: Updated WFTR-664-alignment.mas | Media: New Updated WFTR-664-tree.pdf | |
732 | Media: 732-FinalAlignment.mas | Media: 732-FinalTree.pdf | |
739 |
T/R microbiome
Linking a file code: [[Media: filename.extension]] or optionally [[Media: filename.extension | description]].
W/F microbiome
Linking a file code: [[Media: filename.extension]] or optionally [[Media: filename.extension | description]].
T/R microsporidia gels
W/F microsporidia gels