Talk:20.109(S13):Phylogenetic analysis (Day7): Difference between revisions
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|[[Media: TR-Yellow_739-C8f.txt]] | |[[Media: TR-Yellow_739-C8f.txt]] | ||
|[[Media: 739_S13-M1D7-template.xlsx]] | |[[Media: 739_S13-M1D7-template.xlsx]] | ||
|Alignment of all 739 from TR [[Media: TR-739-alignment.mas]] Alignment of TR+ (Jenny's-WF) 739 [[Media:TR-(JW-WF)-739-alignment.mas]] | |Alignment of all 739 from TR [[Media: TR-739-alignment.mas]] Alignment of TR+ (Jenny's-WF) 739 [[Media:TR-(JW-WF)-739-alignment.mas]] new version still w/ TR + Jenny's-WF [[Media:TR-(JW-WF)-739-alignmentedit.mas]] | ||
|Tree of all 739 clones from TR [[Media:TR-739-tree.pdf]] Tree of TR + (Jenny's-WF) 739 [[Media: TR+(JW-WF)-739-tree.pdf]] | |Tree of all 739 clones from TR [[Media:TR-739-tree.pdf]] Tree of TR + (Jenny's-WF) 739 [[Media: TR+(JW-WF)-739-tree.pdf]] | ||
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|[[Media:TR-Purple_739-C8.txt]] | |[[Media:TR-Purple_739-C8.txt]] | ||
|[[Media:S13-M1D7-template-Sarah Yu.xlsx]] | |[[Media:S13-M1D7-template-Sarah Yu.xlsx]] | ||
|[[Media:module1.mas]] | |[[Media:module1.mas]] more complete file in Dominique's box | ||
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|Purple | |Purple | ||
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|[[Media:TR-Purple_664-MK.xlsx]] | |[[Media:TR-Purple_664-MK.xlsx]] | ||
|[[Media: WFTR-664-alignment.mas]] | |[[Media: WFTR-664-alignment.mas]] | ||
| | |[[Media: WFTR-664-tree.pdf]] | ||
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|Platinum | |Platinum |
Revision as of 22:15, 7 March 2013
General notes
I believe some groups are still in the process of reverse complementing inserts in the non-usual orientation.
Agi is in the process of trimming and analyzing four additional #709 clones prepped and sequenced yesterday -- looks as though only one will be good. I may not finish until after class today, circa 5 pm. Update: even later than that. I can do the final addition to an existing #709 .mas file if need be, also including samples from a student who has been ill.
Final sample-wide alignment files and trees
One representative from each sample-based group should post a .mas and .pdf file here when data are in final form. That way we'll all have quick access to the location sub-trees.
Sample # | Alignment file (.mas) | Tree file (.pdf) |
702 | Media: Final_702_Alignment.mas | Media: Final_702_PhyloTree.pdf |
709 | ||
712 | Media: Final_712_Alignment.mas | Media: Final_712_PhyloTree.pdf |
716 | No clones worked | No clones worked |
405 | ||
664 | ||
732 | ||
729 |
T/R microbiome
Linking a file code: [[Media: filename.extension]] or optionally [[Media: filename.extension | description]].
W/F microbiome
Linking a file code: [[Media: filename.extension]] or optionally [[Media: filename.extension | description]].
T/R microsporidia gels
W/F microsporidia gels