Synthetic Biology:Tools
From OpenWetWare
Via this page, we hope to maintain a collection of links to online tools that are related to Synthetic Biology
DNA Tools
- Vector NTI by Informax, Inc.
- Free-to-academics Windows-only tool for sequence analysis and data management.
- Biopolymer calculator by Schepartz lab
- Calculate extinction coefficients, Tm's, and base composition for your DNA or RNA; calculate amino acid composition and extinction coefficient for your protein
RNA Tools
- mFold by Michael Zuker. This is the main page with links to sites for predicting RNA and DNA folds, calculating Tm's and free energies.
Protein Tools
- Zinc Finger Tools by Barbas Lab
- Design Zinc Finger DNA binding proteins
- ExPASy Proteomics server
- Collection of links to many pages to calculate parameters of your favorite proteins
General Tools
- Registry of Standard Biological Parts
- Colibri E. coli genome site; get sequences, see the position of your gene in the chromosome, see the function of your gene, and other fun stuff
