Difference between revisions of "SynBERC"

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<h3>News</h3>
 
<h3>News</h3>
*'''Post your proposed projects here on OWW, then link to it from the [http://synberc.org/intranet/index.php?title=Proposed_projects SynBERC intranet Proposed Projects page].''' If you don't wish to have your project viewed publicly, you can put it directly on the intranet.
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*1/29/08: What needs to happen at upcoming retreat? Add to [[SynBERC:March 2008 retreat]]
*See the Knight & Endy Lab [[SynBERC:MIT/Lab video tours|Tour]]
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*9/13/07: Contribute to brainstorming before the upcoming meeting: [[SynBERC:Automated cloning brainstorming|Automated Cloning]], [[SynBERC:Registry brainstorming|Registry]]
*The SynBERC extranet will be hosted here, on OpenWetWare. Please edit with impunity!
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*5/21/2007: Devices Thrust meeting tomorrow on [[SynBERC:Devices:220507Devices | Genetic Devices]] from 2-5p EST.
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*5/1/2007: [[SynBERC:Seminar series/Christina Smolke|Christina Smolke]] is speaking at UC Berkeley on May 3 at 4pm PST
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*4/25/2007: [[SynBERC:Seminar series/Remy Chait|Video]] of Remy Chait's talk is available.
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*4/17/2007: [[SynBERC:Seminar series/Remy Chait|Remy Chait]] is speaking at MIT on April 24 at 12pm EST.
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*4/9/2007: The SynBERC sponsored [[SynBERC:Seminar series | seminar series]] is in progress.  Andy Ellington is speaking at Prairie View A&M University on April 11 at 3pm CDT.
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*3/22/2007: [[SynBERC:Seminar series/Steve Benner|Video]] of Steve Benner's talk is available.
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<font size=1>[[SynBERC:News|Browse archive]]</font>
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<h3>SynBERC Calendar</h3>
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[[2007-2008 calendar]]
  
 
<h3>Groups</h3>
 
<h3>Groups</h3>
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*[[SynBERC:PV|Prairie View]]
 
*[[SynBERC:PV|Prairie View]]
 
*[[SynBERC:UCSF|UCSF]]
 
*[[SynBERC:UCSF|UCSF]]
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*[[SynBERC:Training group|Training group]]
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*[[SynBERC:COG|COG]]
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*[[SynBERC:Open cell project|Open Cell]]
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<h3>Courses</h3>
  
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*[[SynBERC:Courses| Courses]]
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<h3>Research Thrusts</h3>
 
<h3>Research Thrusts</h3>
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*[[SynBERC:Human Practice|Human Practice]]
 
*[[SynBERC:Human Practice|Human Practice]]
  
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<h3>Proposed Projects</h3>
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*Add your proposed projects to the appropriate '''Research Thrusts''' above. If you don't wish to have your project viewed publicly, add it to the [http://synberc.private.openwetware.org SynBERC intranet].
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To access the SynBERC intranet, please [[Join|request an OpenWetWare account]] and then email Kevin Costa with your username to be added as a SynBERC user.
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<h3>Testbed Applications</h3>  
 
<h3>Testbed Applications</h3>  
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*http://syntheticbiology.org
 
*http://syntheticbiology.org
 
*http://parts.mit.edu
 
*http://parts.mit.edu
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__NOTOC__
 
  
'''RESOURCES'''
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<h3>Resources</h3>
 
*SynBERC IM  
 
*SynBERC IM  
 
*[[SynBERC:VTC | SynBERC VideoConferencing]]
 
*[[SynBERC:VTC | SynBERC VideoConferencing]]
 
*SynBERC Parts (c/o Registry of Standard Biological Parts)
 
*SynBERC Parts (c/o Registry of Standard Biological Parts)
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<wikionly>
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==Recent changes==
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{{Special:Recentchanges/SynBERC}}
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</wikionly>
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<nonwikionly>
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Visit the [http://openwetware.org/wiki/SynBERC SynBERC wiki].
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</nonwikionly>
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__NOTOC__

Latest revision as of 05:30, 21 February 2008

SynBERC-logo3.jpg The Synthetic Biology Engineering Research Center (SynBERC) is a multi-institution research effort to lay the foundation for synthetic biology, which aims to build biological components and assemble them into integrated systems to accomplish specific tasks.

News

  • 1/29/08: What needs to happen at upcoming retreat? Add to SynBERC:March 2008 retreat
  • 9/13/07: Contribute to brainstorming before the upcoming meeting: Automated Cloning, Registry
  • 5/21/2007: Devices Thrust meeting tomorrow on Genetic Devices from 2-5p EST.
  • 5/1/2007: Christina Smolke is speaking at UC Berkeley on May 3 at 4pm PST
  • 4/25/2007: Video of Remy Chait's talk is available.
  • 4/17/2007: Remy Chait is speaking at MIT on April 24 at 12pm EST.
  • 4/9/2007: The SynBERC sponsored seminar series is in progress. Andy Ellington is speaking at Prairie View A&M University on April 11 at 3pm CDT.
  • 3/22/2007: Video of Steve Benner's talk is available.

Browse archive

SynBERC Calendar

2007-2008 calendar

Groups

Courses

Research Thrusts

Proposed Projects

  • Add your proposed projects to the appropriate Research Thrusts above. If you don't wish to have your project viewed publicly, add it to the SynBERC intranet.

To access the SynBERC intranet, please request an OpenWetWare account and then email Kevin Costa with your username to be added as a SynBERC user.

Testbed Applications

Links

Resources

<wikionly>

Recent changes

18 April 2018

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X-Lab‎‎ (4 changes | history) . . (0). . [ChanEngr‎ (4×)]

     

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User:Korey Griffin‎‎ (2 changes | history) . . (+32). . [Korey Griffin‎ (2×)]

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(cur | prev) . . (-47). . Korey Griffin (talk | contribs) (Contact)

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(cur | prev) . . (+79). . Korey Griffin (talk | contribs) (Empirical Resources)

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User:Johannes Stuttmann‎‎ (3 changes | history) . . (+4,407). . [Johannes Stuttmann‎ (3×)]

     

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(cur | prev) . . (+1,692). . Johannes Stuttmann (talk | contribs)

     

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(cur | prev) . . (+2,470). . Johannes Stuttmann (talk | contribs)

     

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(cur | prev) . . (+245). . Johannes Stuttmann (talk | contribs)

     13:02  Hydrochloric acid‎ (diff | hist) . . (+1). . Yar (talk | contribs) (typing error from user email)

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(User creation log). .

[Yar‎ (2×)]

     

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. . User account Ally B (talk | contribs) was created by Yar (talk | contribs) and password was sent by email ‎

     

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. . User account Jakob (talk | contribs) was created by Yar (talk | contribs) and password was sent by email ‎

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BIOL478/S18:Microarray Data Analysis‎‎ (24 changes | history) . . (+34,776). . [Kam D. Dahlquist‎ (24×)]

     

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(cur | prev) . . (-70). . Kam D. Dahlquist (talk | contribs) (Gridding and Generating Intensity Data: remove old Brightspace link)

     

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(cur | prev) . . (+1). . Kam D. Dahlquist (talk | contribs) (GenePix Pro Protocol (Steps 1-3): fix Brightspace link to raw data)

     

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(cur | prev) . . (+1,241). . Kam D. Dahlquist (talk | contribs) (Before We Begin: add section on lab notebook)

     

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(cur | prev) . . (0). . Kam D. Dahlquist (talk | contribs) (Background: fix list formatting)

     

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(cur | prev) . . (+108). . Kam D. Dahlquist (talk | contribs) (Background: add GRNsight)

     

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(cur | prev) . . (+3,845). . Kam D. Dahlquist (talk | contribs) (Identifying regulatory transcription factors responsible for observed changes in gene expression (step 10): paste in GRNsight instructions)

     

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(cur | prev) . . (+3,072). . Kam D. Dahlquist (talk | contribs) (Identifying regulatory transcription factors responsible for observed changes in gene expression (step 10): paste in protocol from Biomath modeling, modify for HMO1)

     

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(cur | prev) . . (+114). . Kam D. Dahlquist (talk | contribs) (Clustering and GO Term Enrichment with stem (steps 7-8): add section for step 10)

     

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(cur | prev) . . (-751). . Kam D. Dahlquist (talk | contribs) (Clustering and GO Term Enrichment with stem (steps 7-8): delete comment, emphasize to unzip)

     

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(cur | prev) . . (0). . Kam D. Dahlquist (talk | contribs) (Modified t test for each timepoint: fix formula)

     

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(cur | prev) . . (+52). . Kam D. Dahlquist (talk | contribs) (Sanity Check: Number of genes significantly changed: add label to link)

     

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(cur | prev) . . (+29). . Kam D. Dahlquist (talk | contribs) (Sanity Check: Number of genes significantly changed: add link to xkcd comic)

     

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(cur | prev) . . (-360). . Kam D. Dahlquist (talk | contribs) (replace opi1 with hmo1)

     

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(cur | prev) . . (+18). . Kam D. Dahlquist (talk | contribs) (replace wt with dHMO1)

     

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(cur | prev) . . (+36). . Kam D. Dahlquist (talk | contribs) (Modified t test for each timepoint: replace wt with dHMO1)

     

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(cur | prev) . . (-22). . Kam D. Dahlquist (talk | contribs) (Looking at the raw data: fix links to SGD)

     

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(cur | prev) . . (+3). . Kam D. Dahlquist (talk | contribs) (Downloading the Data: change to hmo1)

     

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(cur | prev) . . (+35). . Kam D. Dahlquist (talk | contribs) (Statistical Analysis (Step 6): change to delta-hmo1)

     

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(cur | prev) . . (+61). . Kam D. Dahlquist (talk | contribs) (GenePix Pro Protocol (Steps 1-3): note that this will be demo'd, change opi1 to hmo1)

     

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(cur | prev) . . (+27). . Kam D. Dahlquist (talk | contribs) (Background: steps 1-3 done for you)

     

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(cur | prev) . . (+74). . Kam D. Dahlquist (talk | contribs) (Background: add link for YEASTRACT)

     

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(cur | prev) . . (+15). . Kam D. Dahlquist (talk | contribs) (change dates, mention of Windows 10)

     

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(cur | prev) . . (+27,230). . Kam D. Dahlquist (talk | contribs) (paste in from S18)

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(cur | prev) . . (+18). . Kam D. Dahlquist (talk | contribs) (create page with under construction flag)

     10:27  Dahlquist:Protocols‎ (diff | hist) . . (+152). . Kam D. Dahlquist (talk | contribs) (Dry Lab Protocols: create link to BIOL 478 Spring 2018 protocol)

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Crosby:Lab Members‎‎ (2 changes | history) . . (+41). . [Mohammad H. Dezfulian‎ (2×)]

     

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(cur | prev) . . (+71). . Mohammad H. Dezfulian (talk | contribs) (Recent Alumni)

     

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(cur | prev) . . (-30). . Mohammad H. Dezfulian (talk | contribs) (Graduate Students)

     08:35  CAMRI:SeminarSeries‎ (diff | hist) . . (+62). . Lexi E. Crommett (talk | contribs)
     08:00 (Upload log) . . Reinca (talk | contribs) uploaded File:FinalView2.JPG
     01:58  User:Timothee Flutre‎ (diff | hist) . . (+141). . Timothee Flutre (talk | contribs) (Links: add open data repos)

17 April 2018

     23:41  BME100 s2018:Group7 W1030 L6‎ (diff | hist) . . (+454). . Dragos (talk | contribs) (Intro to Computer-Aided Design)

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BME100 s2018:Group8 W0800 L6‎‎ (3 changes | history) . . (+601). . [Leaverjill‎ (3×)]

     

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(cur | prev) . . (+293). . Leaverjill (talk | contribs) (Feature 2: Hardware - PCR Machine & Fluorimeter)

     

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(cur | prev) . . (+1). . Leaverjill (talk | contribs) (Bayesian Statistics)

     

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(cur | prev) . . (+307). . Leaverjill (talk | contribs) (Feature 2: Hardware - PCR Machine & Fluorimeter)

     23:22  BME100 s2018:Group1 W1030 L6‎ (diff | hist) . . (+8). . Erik Halsband (talk | contribs) (Intro to Computer-Aided Design)
     23:18 (Upload log) . . Erik Halsband (talk | contribs) uploaded a new version of File:ClosedFlourimeter.JPG(Re-rendered with updated walls.)

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BME100 s2018:Group1 W0800 L6‎‎ (2 changes | history) . . (+4). . [Yaroomba‎ (2×)]

     

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(cur | prev) . . (+2). . Yaroomba (talk | contribs) (Feature 2)

     

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(cur | prev) . . (+2). . Yaroomba (talk | contribs) (Feature 1)

</wikionly> <nonwikionly> Visit the SynBERC wiki. </nonwikionly>