Difference between revisions of "Stanford/BIOE44: Schedule"

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Line 50: Line 50:
 
| Yes
 
| Yes
 
| [[Stanford/BIOE44:Module_1:Day5 | Arsenic]]
 
| [[Stanford/BIOE44:Module_1:Day5 | Arsenic]]
| Drew@blackboard introducing functional composition; [http://www.nature.com/nature/comics/syntheticbiologycomic/index.html comic]
+
| Drew@blackboard introducing functional composition; [[Adventures | comic]]
 
|-
 
|-
 
| Device Engineering
 
| Device Engineering
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| Yes
 
| Yes
 
| [[Stanford/BIOE44:Module_1:Day6 | Arsenic!]]
 
| [[Stanford/BIOE44:Module_1:Day6 | Arsenic!]]
| <notes>
+
| Drew@blackboard w/ more on functional composition; [http://www.nature.com/nbt/journal/v26/n7/abs/nbt1413.html Research paper] showing how to indirectly measure PoPS (see the supplement)
 
|-
 
|-
| Device Design
+
| Device Engineering
 
| 8
 
| 8
 
| Thurs Apr 22  
 
| Thurs Apr 22  
 
| Yes
 
| Yes
| [[Stanford/BIOE44:Module_1:Day7 | Arsenic!!]]
+
| (work to build arsenic sensing construct)
| <notes>
+
| [[Media:BIOE44 2010 Day 7.pdf | Lecture notes (finding the PoPS boundaries)]]
 
|-
 
|-
| Device Design
+
| Device Design  
 
| 9
 
| 9
 
| Tues Apr 27  
 
| Tues Apr 27  
 
| Yes
 
| Yes
| What to measure, II?
+
| [[Stanford/BIOE44:Module_3:Day1 | What to measure?]]
| <notes>
+
| [[Media:BIOE44 2010 Day 8.pdf | Introduction to choosing a pollutant slides]]
 
|-
 
|-
| DNA Synthesis
+
| DNA Design
 
| 10
 
| 10
 
| Thurs Apr 29  
 
| Thurs Apr 29  
 
| Yes
 
| Yes
| Orders away!
+
| [[Stanford/BIOE44:Module_3:Day2 | Design your DNA]]
| <notes>
+
| [[Media:BIOE44 2010 Day 9.pdf | Lectures notes (DNA synthesis)]]
 
|-
 
|-
| Meanwhile...
+
| DNA Design & Order
 
| 11
 
| 11
 
| Tues May 4  
 
| Tues May 4  
 
| Yes
 
| Yes
| Moss essentials
+
| [[Stanford/BIOE44:Module_3:Day3 | Orders Away!]]
| <notes>
+
| (discussion of Joy/Kurweil & Sharp editorials)
 
|-
 
|-
 
| Meanwhile...
 
| Meanwhile...
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| Thurs May 6  
 
| Thurs May 6  
 
| Yes
 
| Yes
| Moss transformation
+
| [[Stanford/BIOE44:Module_4:Day1 | Moss and Arsenic]]
| <notes>
+
| (no lecture notes, introducing teams moss & arsenic)
 
|-
 
|-
 
| Meanwhile...
 
| Meanwhile...
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| Tues May 11  
 
| Tues May 11  
 
| Yes
 
| Yes
| Moss testing
+
| [[Stanford/BIOE44:Module_4:Day2 | Making ready!]](moss & arsenic teams)
| <notes>
+
| [[Media:BIOE44 2010 Day 12.pdf | Lectures notes (Property Rights)]]
 
|-
 
|-
 
| Meanwhile...
 
| Meanwhile...
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| Thurs May 13  
 
| Thurs May 13  
 
| Yes
 
| Yes
| Moss testing, II
+
| [[Stanford/BIOE44:Module_4:Day3 | Making ready!]] (moss & arsenic teams)
| <notes>
+
| (research paper presentations)
 
|-
 
|-
| Device Testing
+
| Baking...
 
| 15
 
| 15
 
| Tues May 18  
 
| Tues May 18  
 
| Yes
 
| Yes
| Assembly & preparations
+
| [[Stanford/BIOE44:Module_5:Day1| RBS design]]
| <notes>
+
| (ad hoc class)
 
|-
 
|-
| Device Testing
+
| Assembly & Testing, Day 1
 
| 16
 
| 16
 
| Thurs May 20  
 
| Thurs May 20  
 
| Yes
 
| Yes
| Testing day 1
+
| [[Stanford/BIOE44:Module_5:Day2| Project Building]]
| <notes>
+
| (in class discussion of today's Gibson et al. paper; [http://www.sciencemag.org/cgi/content/abstract/science.1190719 URL])
 
|-
 
|-
| Device Testing
+
| Assembly & Testing, Day 2
 
| 17
 
| 17
 
| Tues May 25
 
| Tues May 25
 
| Yes
 
| Yes
| Testing day 2
+
| [[Stanford/BIOE44:Module_5:Day3| Continue Building]]
 
| <notes>
 
| <notes>
 
|-
 
|-
| Analysis & Wrap-Up
+
| Assembly & Testing, Day 3
 
| 18
 
| 18
 
| Thurs May 27  
 
| Thurs May 27  
 
| Yes
 
| Yes
| Analysis & Wrap-Up
+
| Testing day 3
 +
| <notes>
 +
|-
 +
| Wrap up
 +
| 18
 +
| Tuesday June 1
 +
| Yes
 +
| Lab wrap up
 
| <notes>
 
| <notes>
 
|-
 
|-
 
|}
 
|}

Latest revision as of 20:39, 22 May 2010

Stanfordbioe44title2.jpg

Home        People        Schedule        Key Info.        OWW Basics       
DNA Engineering        Devices        Synthesis        Baking        Testing

MODULE DAY DATE LECTURE? LAB Notes
Orientation 1 Tue Mar 30 No Lab essentials Lecture Notes
DNA Engineering 2 Thur Apr 1 Yes Mystery! Lecture Notes
DNA Engineering 3 Tues Apr 6 Yes Revealed Lecture Notes
DNA Engineering 4 Thurs Apr 8 Yes Ligate, ZAP!, plate Lecture Notes
DNA Engineering 5 Tues Apr 13 Yes Validation Kosh- & Isis-led discussion
Device Engineering 6 Thurs Apr 15 Yes Arsenic Drew@blackboard introducing functional composition; comic
Device Engineering 7 Tues Apr 20 Yes Arsenic! Drew@blackboard w/ more on functional composition; Research paper showing how to indirectly measure PoPS (see the supplement)
Device Engineering 8 Thurs Apr 22 Yes (work to build arsenic sensing construct) Lecture notes (finding the PoPS boundaries)
Device Design 9 Tues Apr 27 Yes What to measure? Introduction to choosing a pollutant slides
DNA Design 10 Thurs Apr 29 Yes Design your DNA Lectures notes (DNA synthesis)
DNA Design & Order 11 Tues May 4 Yes Orders Away! (discussion of Joy/Kurweil & Sharp editorials)
Meanwhile... 12 Thurs May 6 Yes Moss and Arsenic (no lecture notes, introducing teams moss & arsenic)
Meanwhile... 13 Tues May 11 Yes Making ready!(moss & arsenic teams) Lectures notes (Property Rights)
Meanwhile... 14 Thurs May 13 Yes Making ready! (moss & arsenic teams) (research paper presentations)
Baking... 15 Tues May 18 Yes RBS design (ad hoc class)
Assembly & Testing, Day 1 16 Thurs May 20 Yes Project Building (in class discussion of today's Gibson et al. paper; URL)
Assembly & Testing, Day 2 17 Tues May 25 Yes Continue Building <notes>
Assembly & Testing, Day 3 18 Thurs May 27 Yes Testing day 3 <notes>
Wrap up 18 Tuesday June 1 Yes Lab wrap up <notes>