Sriram Kosuri: Difference between revisions
No edit summary |
|||
| Line 2: | Line 2: | ||
[[Image:Sri Kosuri.jpg|thumb|right|Sri at work]] | [[Image:Sri Kosuri.jpg|thumb|right|Sri at work]] | ||
===Bio=== | ===Bio=== | ||
Since October, I have been working | Since October, I have been working at a small Cambridge-area startup called Joule Biotechnologies. I am also on the Board of Directors for OpenWetWare. I previously did a short postdoctoral stint in [http://laublab.mit.edu/ Mike Laub's lab] working on cell cycle in ''Caulobacter crescentus''. Prior to the Laub lab, I was a graduate student in [[Drew Endy]]'s lab and worked on understanding the development of a simple virus (T7) that infects ''E. coli''. As an undergraduate at [http://www.berkeley.edu UC Berkeley], I worked with [http://www.lbl.gov/~aparkin Adam Arkin], Dale Kaiser, and Roy Welch on modeling traveling wave formation in ''M. xanthus''. | ||
==Science== | ==Science== | ||
| Line 16: | Line 14: | ||
*Reforming the reward structures in biological sciences. -- more on this later, for now see [[Science 2.0]] | *Reforming the reward structures in biological sciences. -- more on this later, for now see [[Science 2.0]] | ||
*The energy problem. | |||
*OpenWetWare of course! | *OpenWetWare of course! | ||
| Line 33: | Line 33: | ||
===Publications=== | ===Publications=== | ||
'''Refactoring bacteriophage T7'''<br> | '''Refactoring bacteriophage T7'''<br> | ||
[[Leon Chan|Leon Y. Chan]], [[Sriram Kosuri]] and [[Drew Endy]]<br> | |||
''Molecular Systems Biology'' 13 September 2005 DOI:10.1038/msb4100025<br> | ''Molecular Systems Biology'' 13 September 2005 DOI:10.1038/msb4100025<br> | ||
[http://www.nature.com/msb/journal/v1/n1/full/msb4100025.html URL] | [http://www.nature.com/msb/journal/v1/n1/full/msb4100025.html URL] | ||
[http://openwetware.mit.edu/images/e/ef/Msb4100025.pdf PDF reprint] | [http://openwetware.mit.edu/images/e/ef/Msb4100025.pdf PDF reprint] | ||
| Line 41: | Line 41: | ||
'''TABASCO: A single molecule, base-pair resolved gene expression simulator'''<br> | '''TABASCO: A single molecule, base-pair resolved gene expression simulator'''<br> | ||
[[Sriram Kosuri]], [[Jason Kelly]] and [[Drew Endy]]<br> | [[Sriram Kosuri]], [[Jason Kelly]] and [[Drew Endy]]<br> | ||
''BMC Bioinformatics 2007'', '''8''':480 doi:10.1186/1471-2105-8-480<br> | |||
[http://www.biomedcentral.com/1471-2105/8/480 URL]<br> | |||
===Interesting Stuff=== | ===Interesting Stuff=== | ||
Revision as of 13:42, 13 July 2008
Personal
Bio
Since October, I have been working at a small Cambridge-area startup called Joule Biotechnologies. I am also on the Board of Directors for OpenWetWare. I previously did a short postdoctoral stint in Mike Laub's lab working on cell cycle in Caulobacter crescentus. Prior to the Laub lab, I was a graduate student in Drew Endy's lab and worked on understanding the development of a simple virus (T7) that infects E. coli. As an undergraduate at UC Berkeley, I worked with Adam Arkin, Dale Kaiser, and Roy Welch on modeling traveling wave formation in M. xanthus.
Science
Interests
- Understanding those aspects of biological design that allow for certain robust features of development in the face of large intrinsic and extrinsic variation specifically on non-evolutionary time-scales (I am currently giving up on the past. That may change in the future.).
- Enabling the design, construction, and use of biological organisms for the purposes of further scientific understanding; keeping extremely aware of the use of engineered biological organisms for other purposes.
- Property rights as related to biological information and organisms; understanding and reforming current and future frameworks; I really like these people
- Reforming the reward structures in biological sciences. -- more on this later, for now see Science 2.0
- The energy problem.
- OpenWetWare of course!
Past Projects
TABASCO -- A single molecule base-pair resolved gene expression simulator
Measure and Models of T7 Infection
How does T7 deal with Uncertainty
Publications
Refactoring bacteriophage T7
Leon Y. Chan, Sriram Kosuri and Drew Endy
Molecular Systems Biology 13 September 2005 DOI:10.1038/msb4100025
URL
PDF reprint
News & Views
October 2004 version
TABASCO: A single molecule, base-pair resolved gene expression simulator
Sriram Kosuri, Jason Kelly and Drew Endy
BMC Bioinformatics 2007, 8:480 doi:10.1186/1471-2105-8-480
URL
Interesting Stuff
The beginnings of a blog.
See my interesting stuff page
A failed Research Plan for a job at Harvard's CGR
Contact
Phone: 617.253.3677
OWW users: Post a message on my talk page, or send me an email.
Email: 
Postal:
31 Ames St.
68-611
Cambridge, MA 02139
PGP Key: Use this is you have super secret information to send!
-----BEGIN PGP PUBLIC KEY BLOCK----- Version: PGP 8.0.3 - not licensed for commercial use: www.pgp.com mQGiBEBh/jcRBAD6M0Zd6Bd5ePlzGwHz67NOcZUnMOP6Hixp/6N1pVo3dU8Kfmwe ZE6usfGDgPfqd5YSuMJfmDZWbsWhiF2f1WGuGyiuhQY/lTfxOf2sII5RCboqFJy+ YlaTFy7kphiji6qKoCUmMrLLiL33bOAudADHUyvpIfALVsvvJM64PKp5AwCg/4A8 GrKTtjPfs80hqnlakIsdRJ8D/jt8qwWEUY5fLK5DrlwcRFMwn1vJFv2Bl6/IBCQa T41v7MKma1EXzYWym7hyOH9IwC7YYUYzEsu1je7KeiIKvwTMgfEOBrc5J9y/7bXz PU2z/Y4rlGOMb/I6ww+URhreBCVpmMbdhAUFRx3t5Nqx3Zn//A0CT3KSctWFQj06 m9C4BADK3++94IAxXqfb8gIAS+gGPj4NJ5T99ZnNdGF2YIAdZ71SCkRnqGZbjey0 xiGfvQ4ph9uzocCNHRFmGjAupqRccgbnUlgLwD36GTkeLMmlKBTdpTz+cqux1trq O3erau1uUEFEDAuB3lYKfcrp5fOF1x8dTVklZ3g9dporpv3f5LQfU3JpcmFtIEtv c3VyaSA8c2tvc3VyaUBtaXQuZWR1PokAXQQQEQIAHQUCQGH+NwUJA8JnAAcLCQgH AwIKAhkBBRsDAAAAAAoJEDX3Sb9719Ja/08AoPLfDC/yXbdPjF1lyO2sX9VJiK7G AKDD4JOE3SONsHK9GJoD2KTn12w48rkEDQRAYf43EBAA+RigfloGYXpDkJXcBWyH huxh7M1FHw7Y4KN5xsncegus5D/jRpS2MEpT13wCFkiAtRXlKZmpnwd00//jocWW IE6YZbjYDe4QXau2FxxR2FDKIldDKb6V6FYrOHhcC9v4TE3V46pGzPvOF+gqnRRh 44SpT9GDhKh5tu+Pp0NGCMbMHXdXJDhK4sTw6I4TZ5dOkhNh9tvrJQ4X/faY98h8 ebByHTh1+/bBc8SDESYrQ2DD4+jWCv2hKCYLrqmus2UPogBTAaB81qujEh76DyrO H3SET8rzF/OkQOnX0ne2Qi0CNsEmy2henXyYCQqNfi3t5F159dSST5sYjvwqp0t8 MvZCV7cIfwgXcqK61qlC8wXo+VMROU+28W65Szgg2gGnVqMU6Y9AVfPQB8bLQ6mU rfdMZIZJ+AyDvWXpF9Sh01D49Vlf3HZSTz09jdvOmeFXklnN/biudE/F/Ha8g8VH MGHOfMlm/xX5u/2RXscBqtNbno2gpXI61Brwv0YAWCvl9Ij9WE5J280gtJ3kkQc2 azNsOA1FHQ98iLMcfFstjvbzySPAQ/ClWxiNjrtVjLhdONM0/XwXV0OjHRhs3jMh LLUq/zzhsSlAGBGNfISnCnLWhsQDGcgHKXrKlQzZlp+r0ApQmwJG0wg9ZqRdQZ+c fL2JSyIZJrqrol7DVes91hcAAgIP/0ywIXwh1hYpVE5EbG/0HFP8mSZ+UrKGostS soZr5lUC0TzfTU8YVYLNH/gA4QDqlir3MCaAeUS5wQShCpiPxQO9sE3nlLsk4Bbg KuCGh4Lm4sHJfMBMGwJXVwb/1VqU4qHp58mGeXLfccrtxcnhfqsg3o0TRPqVAOkg u6hy6p3prZSym+3ZS4QIVLUN/ja2D0cajRzONhR0gcgCwAMVoUlZoKiXs/nTBxbz JZNgUJTr4k/GZF1NGhDtrC6QH1a9u44/tLo/4oXsueyFqvI71W5Ok/NI5mANAiPj 6/VYNJcqwyc2DWPtToEQApCxrTDX/3jKs5bSS8UFhWwAO8q56KJI4AwnxQP/QsRI LbNg87nowCYS731GPF5D6ky+IW3X/5rMUbcvsMYieMEO71sfEzTU7k19I6XP5Iqq 24SBSxRQxWpRwS9FzWowlwHivS6mReSE1jwrlVEONsKIftFGc7IS4xJNulqh/ZkU dPIooIBeWOfCPb2h2EBPq7IsU6B0y4UIQLIf9i0lTaZ2oIFsjIPQplIvPmstUtUs 7wS7MutWqFikTdmiPjQ6MQ6gYzOHsGlg/MKA8cAJUDQFGK/pT8Jh5YlmP319fq4T fI4fH/OeA9CSlkJ6fnCG1tNmgm7Ozz+RFCFnSxb2ahrDYo2ArmAobsuFym1uy3jy 7wCayapziQBSBBgRAgASBQJAYf43BQkDwmcABRsMAAAAAAoJEDX3Sb9719Ja0KUA oObxHxfl+6/pt3LqLDBz0bwtFUbmAJ9RU+BewLIVD3itGK46XnVCtl3g/g== =xfzP -----END PGP PUBLIC KEY BLOCK-----
Who's Visiting
<html> <a href="http://clustrmaps.com/counter/maps.php?url=http://openwetware.org/wiki/Sriram_Kosuri" id="clustrMapsLink"><img src="http://clustrmaps.com/counter/index2.php?url=http://openwetware.org/wiki/Sriram_Kosuri" border=1 alt="Locations of visitors to this page"onError="this.onError=null; this.src='http://www.meetomatic.com/images/clustrmaps-back-soon.jpg'; document.getElementById('clustrMapsLink').href='http://clustrmaps.com/'"> </a> </html>
