Difference between revisions of "Registry of Standard Biological Models/Model Catalog"

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__NOTOC__
 
__NOTOC__
  
==Regulators==
+
==Regulators models==
  
 
{| style="width:90%; height:100px" border="1" align="center"
 
{| style="width:90%; height:100px" border="1" align="center"
! Type !! DNA part !! Description !! Model !! CellML Validated !! Experimentally Characterized !! Comments
+
! Type !! Description !! DNA part !! ID Card !! CellML File !! CellML Validated !! Experimentally Characterized !! Comments
 
|-
 
|-
 
|[[Image:VBB_Regulator_Icon.png|center|30px|Virtual BioBrick Regulator]]
 
|[[Image:VBB_Regulator_Icon.png|center|30px|Virtual BioBrick Regulator]]
 +
!TetR
 
|<bbpart>Bba_J13211</bbpart>
 
|<bbpart>Bba_J13211</bbpart>
!TetR
 
 
![[Registry_of_Standard_Biological_Models/Model_Catalog/BBa_J13211_Model|link]]
 
![[Registry_of_Standard_Biological_Models/Model_Catalog/BBa_J13211_Model|link]]
 +
![[Media:CellML_J13211.cml|link]]
 
!NO
 
!NO
 
!NO
 
!NO
Line 16: Line 17:
 
|-
 
|-
 
|[[Image:VBB_Regulator_Icon.png|center|30px|Virtual BioBrick Regulator]]
 
|[[Image:VBB_Regulator_Icon.png|center|30px|Virtual BioBrick Regulator]]
 +
!TBD
 
|<bbpart>other</bbpart>
 
|<bbpart>other</bbpart>
!TBD
 
 
![[Registry_of_Standard_Biological_Models/Model_Catalog/BBa_?????_Model|link]]
 
![[Registry_of_Standard_Biological_Models/Model_Catalog/BBa_?????_Model|link]]
 +
![[Media:CellML_J13211.cml|link]]
 
!NO
 
!NO
 
!NO
 
!NO
Line 26: Line 28:
  
  
==Coding Proteins==
+
==Coding Proteins models==
  
 
{| style="width:90%; height:100px" border="1" align="center"
 
{| style="width:90%; height:100px" border="1" align="center"
! Type !! DNA part !! Description !! Model !! CellML Validated !! Experimentally Characterized !! Comments
+
! Type !! Description !! DNA part !! ID Card !! CellML File !! CellML Validated !! Experimentally Characterized !! Comments
 
|-
 
|-
 
|[[Image:VBB_CodingProtein_Icon.png|center|30px|Virtual BioBrick Protein]]
 
|[[Image:VBB_CodingProtein_Icon.png|center|30px|Virtual BioBrick Protein]]
 +
!GFP
 
|<bbpart>Bba_E0040</bbpart>
 
|<bbpart>Bba_E0040</bbpart>
!GFP
 
 
![[Registry_of_Standard_Biological_Models/Model_Catalog/BBa_E0040_Model|link]]
 
![[Registry_of_Standard_Biological_Models/Model_Catalog/BBa_E0040_Model|link]]
 +
![[Media:CellML_J13211.cml|link]]
 
!NO
 
!NO
 
!YES
 
!YES
Line 40: Line 43:
 
|-
 
|-
 
|[[Image:VBB_CodingProtein_Icon.png|center|30px|Virtual BioBrick Environment]]
 
|[[Image:VBB_CodingProtein_Icon.png|center|30px|Virtual BioBrick Environment]]
 +
! TBD
 
|<bbpart>other</bbpart>
 
|<bbpart>other</bbpart>
! TBD
 
 
![[Registry_of_Standard_Biological_Models/Model_Catalog/BBa_?????_Model|link]]
 
![[Registry_of_Standard_Biological_Models/Model_Catalog/BBa_?????_Model|link]]
 +
![[Media:CellML_J13211.cml|link]]
 
!NO
 
!NO
 
!NO
 
!NO
Line 49: Line 53:
  
  
==Inverters==
+
==Inverters models==
  
 
{| style="width:90%; height:100px" border="1" align="center"
 
{| style="width:90%; height:100px" border="1" align="center"
! Type !! DNA part !! Description !! Model !! CellML Validated !! Experimentally Characterized !! Comments
+
! Type !! Description !! DNA part !! ID Card !! CellML File !! CellML Validated !! Experimentally Characterized !! Comments
 
|-
 
|-
 
|[[Image:VBB_Inverter_Icon.png|center|30px|Virtual BioBrick Protein]]
 
|[[Image:VBB_Inverter_Icon.png|center|30px|Virtual BioBrick Protein]]
 +
!LacI based
 
|<bbpart>Bba_E0040</bbpart>
 
|<bbpart>Bba_E0040</bbpart>
!GFP
 
 
![[Registry_of_Standard_Biological_Models/Model_Catalog/BBa_E0040_Model|link]]
 
![[Registry_of_Standard_Biological_Models/Model_Catalog/BBa_E0040_Model|link]]
 +
![[Media:CellML_J13211.cml|link]]
 +
!NO
 
!NO
 
!NO
!YES
 
 
|
 
|
 
|-
 
|-
 
|[[Image:VBB_Inverter_Icon.png|center|30px|Virtual BioBrick Inverter]]
 
|[[Image:VBB_Inverter_Icon.png|center|30px|Virtual BioBrick Inverter]]
 +
! TBD
 
|<bbpart>other</bbpart>
 
|<bbpart>other</bbpart>
! TBD
 
 
![[Registry_of_Standard_Biological_Models/Model_Catalog/BBa_?????_Model|link]]
 
![[Registry_of_Standard_Biological_Models/Model_Catalog/BBa_?????_Model|link]]
 +
![[Media:CellML_J13211.cml|link]]
 
!NO
 
!NO
 
!NO
 
!NO
Line 72: Line 78:
  
  
==Assemblies==
+
==Assemblies models==
  
 
{| style="width:90%; height:100px" border="1" align="center"
 
{| style="width:90%; height:100px" border="1" align="center"
! Type !! DNA part !! Description !! Model !! CellML Validated !! Experimentally Characterized !! Comments
+
! Type !! Description !! DNA part !! ID Card !! CellML File !! CellML Validated !! Experimentally Characterized !! Comments
 
|-
 
|-
 
|[[Image:VBB_Assembly_Icon.png|center|30px|Virtual BioBrick Protein]]
 
|[[Image:VBB_Assembly_Icon.png|center|30px|Virtual BioBrick Protein]]
 +
!GFP
 
|<bbpart>Bba_E0040</bbpart>
 
|<bbpart>Bba_E0040</bbpart>
!GFP
 
 
![[Registry_of_Standard_Biological_Models/Model_Catalog/BBa_E0040_Model|link]]
 
![[Registry_of_Standard_Biological_Models/Model_Catalog/BBa_E0040_Model|link]]
 +
![[Media:CellML_J13211.cml|link]]
 
!NO
 
!NO
 
!YES
 
!YES
Line 86: Line 93:
 
|-
 
|-
 
|[[Image:VBB_Assembly_Icon.png|center|30px|Virtual BioBrick Inverter]]
 
|[[Image:VBB_Assembly_Icon.png|center|30px|Virtual BioBrick Inverter]]
 +
! TBD
 
|<bbpart>other</bbpart>
 
|<bbpart>other</bbpart>
! TBD
 
 
![[Registry_of_Standard_Biological_Models/Model_Catalog/BBa_?????_Model|link]]
 
![[Registry_of_Standard_Biological_Models/Model_Catalog/BBa_?????_Model|link]]
 +
![[Media:CellML_J13211.cml|link]]
 
!NO
 
!NO
 
!NO
 
!NO
 
|
 
|
 
|}
 
|}

Revision as of 07:29, 10 September 2006

Virtual BioBrick Model Catalog

Regulators models

Type Description DNA part ID Card CellML File CellML Validated Experimentally Characterized Comments
Virtual BioBrick Regulator
TetR <bbpart>Bba_J13211</bbpart> link link NO NO
Virtual BioBrick Regulator
TBD <bbpart>other</bbpart> link link NO NO


Coding Proteins models

Type Description DNA part ID Card CellML File CellML Validated Experimentally Characterized Comments
Virtual BioBrick Protein
GFP <bbpart>Bba_E0040</bbpart> link link NO YES
Virtual BioBrick Environment
TBD <bbpart>other</bbpart> link link NO NO


Inverters models

Type Description DNA part ID Card CellML File CellML Validated Experimentally Characterized Comments
Virtual BioBrick Protein
LacI based <bbpart>Bba_E0040</bbpart> link link NO NO
Virtual BioBrick Inverter
TBD <bbpart>other</bbpart> link link NO NO


Assemblies models

Type Description DNA part ID Card CellML File CellML Validated Experimentally Characterized Comments
Virtual BioBrick Protein
GFP <bbpart>Bba_E0040</bbpart> link link NO YES
Virtual BioBrick Inverter
TBD <bbpart>other</bbpart> link link NO NO