Registry of Standard Biological Models/Basic Component Models/Constitutive mRNA Protein Expression Dynamic

ID: Constitutive mRNA/Protein expression

Description: Constitutive mRNA/Protein expression Hypothesis: central dogma: gene -> mRNA -> protein all hypothesis applicable to sub-parts Inputs: nb-gene-copies time Outputs: [Protein] Characteristic parameters: none

Protein Generator Architecture

CellML structure (CellML 1.1 spec)

• Component: Constitutive_mRNA/ProteinExpression
• Units:
  • Already defined in sub-components
• Imports:
  • Components:
    • ConstitutivePromoterRBS
    • Protein

• Variables:
  • time (public interface = in)
  • nbGeneCopies (public interface = in)
  • protein (public interface = out / init value = 0.)
• MathML
  • none

Comments

• Not too sure how to connect the components together following their import
• Do I have to declare all the variables I need to use from the imported components ?
• How do I 'trigger' the dynamic behaviour of the sub-components ?