Registry of Standard Biological Models: Difference between revisions
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|bgcolor="#181860"|<font face="tahoma" size="2" color=#ffffff>A collection of models of biological parts that can be reused and | |bgcolor="#181860"|<font face="tahoma" size="2" color=#ffffff>A collection of models of biological parts that can be freely reused and composed with each other to produce more complex models. A draft implementation of the registry is underway and collaborators are being sought.</font> | ||
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|align="center"|'''Talk to us at''' - [[BioSysBio:abstracts/2007/Vincent_Rouilly | '''BioSysBio 2007''']], [http://www.syntheticbiology.ethz.ch/conf_2007 SB3.0], and [[Registry of Standard Biological Models/Presentation | '''iGEM Jamboree Workshop 2007''']] | |||
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|width=" | |'''Goals''' | ||
*To contribute to the Open Source [[Synthetic Biology]] effort. | *To contribute to the Open Source [[Synthetic Biology]] effort. | ||
*To store, curate and support models related to physical | *To store, curate and support models related to [http://parts.mit.edu physical Biobricks]. | ||
*To drive and guide the experimental characterization of BioBricks. | *To drive and guide the experimental characterization of BioBricks. | ||
*To enable the reuse of modular part models. | *To enable the reuse of modular part models. | ||
*To provide a forum for modelers to contribute to the BioBricks effort. | *To provide a forum for modelers to contribute to the BioBricks effort. | ||
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|width="350px" class="blue" | '''Activities''' | |width="350px" class="blue" valign="top" | | ||
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|'''Activities''' | |||
*[[/Registry organization|Planning]] the architecture of a registry of standard biological models. | |||
*Building a [[Registry of Standard Biological Models/Model Catalog|collection]] of standard biological models. | *Building a [[Registry of Standard Biological Models/Model Catalog|collection]] of standard biological models. | ||
*Define a modeling description language that is: | *Define a modeling description language that is: | ||
**Machine readable | **Machine readable | ||
**Capable of describing gene expression networks | **Capable of describing gene expression networks | ||
**Modular (standardized defined inputs/ouputs) | **Modular (standardized defined inputs/ouputs) | ||
**Hierarchical (models are composable) | **Hierarchical (models are composable) | ||
**Capable of describing models that can be related to experimental data. | **Capable of describing models that can be related to experimental data. | ||
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*See [[Registry of Standard Biological Models/CellML Practical|this page]] for a draft implementation. | *See [[Registry of Standard Biological Models/CellML Practical|this page]] for a draft implementation. | ||
*See [[Registry_of_Standard_Biological_Models/Basic_Component_Models|this page]] for a draft on model implementations following CellML 1.1. | *See [[Registry_of_Standard_Biological_Models/Basic_Component_Models|this page]] for a draft on model implementations following CellML 1.1. | ||
Latest revision as of 14:49, 4 October 2007
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