Difference between revisions of "Rao:Publications"

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''IEEE Transactions on Automatic Control'', 48(2):246-258, 2003 <br>
''IEEE Transactions on Automatic Control'', 48(2):246-258, 2003 <br>
[[User:ChrisRao|Rao CV]], Rawlings JB, Mayne DQ <br>
[[User:ChrisRao|Rao CV]], Rawlings JB, Mayne DQ <br>
[http://toothbase.scs.uiuc.edu/~chris/rao2003_ieee.pdf PDF]
[http://toothbase.scs.uiuc.edu/~chris/rao_ieee2003.pdf PDF]

Revision as of 20:36, 15 December 2010

Rao Lab

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PDF reprints are provided below within the context of fair use. Please obtain copies from the publisher if appropriate.

Continuous control of flagellar gene expression by the σ28–FlgM regulatory circuit in Salmonella enterica
Molecular Microbiology, November, 2010,
Saini S, Floess E, Aldridge C, Brown J, Aldridge PD, Rao CV

The interaction dynamics of a negative feedback loop regulates flagellar number in Salmonella enterica serovar Typhimurium
Molecular Microbiology, 78(6):1416–1430, 2010,
Aldridge C, Poonchareon K, Saini S, Soloyva A, Rao CV, Imada K, Minamino T, Aldridge PD
PubMed PDF

Attractant binding induces distinct structural changes to the polar and lateral signaling clusters in Bacillus subtilis chemotaxis.
Journal of Biological Chemistry, November 2010,
Wu K, Walukiewicz HE, Glekas GD, Ordal GW, Rao CV

Site-specific methylation in Bacillus subtilis chemotaxis: The effect of covalent modifications to the chemotaxis receptor McpB.
Microbiology, September 2010,
Glekas GD, Cates JR, Cohen TM, Rao CV, Ordal GW

FliZ Induces a Kinetic Switch in Flagellar Gene Expression
Journal of Bacteriology, 192(24):6477-81, 2010
Saini S, Koirala S, Floess E, Mears PJ, Chemla YR, Golding I, Aldridge C, Aldridge PD, Rao CV
PubMed PDF

Role of cross talk in regulating the dynamic expression of the flagellar Salmonella pathogenicity island 1 and type 1 fimbrial genes
Journal of Bacteriology, 192(21):5767-77, 2010
Saini S, Slauch JM, Aldridge PD, Rao CV

The role of coupled positive feedback in the expression of the SPI1 type three secretion system in Salmonella
PLoS Pathogens, 6(7):e1001025, 2010
Saini S, Ellermeier JR, Slauch JM, Rao CV

Aromatic acid metabolites of Escherichia coli K-12 can induce the marRAB operon
Journal of Bacteriology, 92(18):4786-9, 2010
Chubiz LM, Rao CV
PubMed PDF

SprB is the molecular link between Salmonella pathogenicity island 1 (SPI1) and SPI4
Journal of Bacteriology, 192(9):2459-62, 2010
Saini S, Rao CV
PubMed PDF

A modular positive feedback-based gene amplifier
Journal of Biological Engineering, 26;4:4, 2010
Nistala GJ, Wu K, Rao CV, Bhalerao KD

The role of configuration and coupling in autoregulatory gene circuits.
Molecular Microbiology, 75(2):513-27, 2010
Wu K, Rao CV
PubMed PDF

Regulation of arabinose and xylose metabolism in Escherichia coli
Applied and Environmental Microbiology, 76(5):1524-32, 2010
Desai TD, Rao CV
PubMed PDF

A PAS domain binds asparagine in the chemotaxis receptor McpB in Bacillus subtilis
Journal of Biological Chemistry, 285(3):1870-8, 2010
Glekas GD, Foster RM, Cates JR, Estrella JA, Wawrzyniak MJ, Rao CV, Ordal GW

High-resolution, long-term characterization of bacterial motility using optical tweezers
Nature Methods, 6(11):831-5, 2009
Min TL, Mears PJ, Chubiz LM, Rao CV, Golding I, Chemla YR
PubMed PDF

The molecular basis of excitation and adaptation during chemotactic sensory transduction in bacteria
Contributions to Microbiology, 16:33-64, 2009
Rao CV, Ordal GW
PubMed PDF

Engineering transcription factors with novel DNA-binding specificity using comparative genomics
Nucleic Acids Research, 37(8):2493-503, 2009
Desai TA, Rodionov DA, Gelfand MS, Alm EJ, Rao CV
PubMed PDF

Role of FimW, FimY, and FimZ in regulating the expression of type i fimbriae in Salmonella enterica serovar Typhimurium
Journal of Bacteriology, 191(9):3003-10, 2009
Saini S, Pearl JA, Rao CV
PubMed PDF

Calling heads from tails: the role of mathematical modeling in understanding cell polarization
Current Opinions in Cell Biology, 21(1):74-81, 2009
Onsum MD, Rao CV
PubMed PDF

The rate of protein secretion dictates the temporal dynamics of flagellar gene expression
Molecular Microbiology, 70(4):924-37, 2008
Brown JD, Saini S, Aldridge C, Herbert J, Rao CV, Aldridge PD
PubMed PDF

The three adaptation systems of Bacillus subtilis chemotaxis
Trends in Microbiology, 16(10):480-7, 2008
Rao CV, Glekas GD, Ordal GW
PubMed PDF

Computational design of orthogonal ribosomes
Nucleic Acids Research, 36(12):4038-46, 2008
Chubiz LM, Rao CV
PubMed PDF

FliZ Is a posttranslational activator of FlhD4C2-dependent flagellar gene expression
Journal of Bacteriology, 190(14):4979-88, 2008
Saini S, Brown JD, Aldridge PD, Rao CV
PubMed PDF

The Salmonella SPI1 type three secretion system responds to periplasmic disulfide bond status via the flagellar apparatus and the RcsCDB system
Journal of Bacteriology, 190(1):87-97, 2008
Lin D, Rao CV, Slauch JM
PubMed PDF

A mathematical model for neutrophil gradient sensing and polarization
PLoS Computational Biology, 116;3(3):e36, 2007
Onsum MD, Rao CV
PubMed PDF Matlab Code

Phosphatase localization in bacterial chemotaxis: divergent mechanisms, convergent principles
Physical Biology, 14;2(3):148-58, 2005
Rao CV, Kirby JR, Arkin AP
PubMed PDF

An allosteric model for transmembrane signaling in bacterial chemotaxis
Journal of Molecular Biology, 15;343(2):291-303, 2004
Rao CV, Frenklach M, Arkin AP
PubMed PDF

Design and diversity in bacterial chemotaxis: a comparative study in Escherichia coli and Bacillus subtilis
PLoS Biology, 2(2):E49, 2004
Rao CV, Kirby JR, Arkin AP
PubMed PDF

Stochastic chemical kinetics and the quasi-steady-state assumption: Application to the Gillespie algorithm
Journal of Chemical Physics, 118(11):4999-5010, 2003
Rao CV, Kirby JR, Arkin AP

Constrained state estimation for nonlinear discrete-time systems: stability and moving horizon approximations
IEEE Transactions on Automatic Control, 48(2):246-258, 2003
Rao CV, Rawlings JB, Mayne DQ

Control, exploitation and tolerance of intracellular noise
Nature, 14;420(6912):246 - 258, 2002
Rao CV, Wolf DM, Arkin AP
PubMed PDF

Control motifs for intracellular regulatory networks
Annual Reviews in Biomedical Engineering, 3:391-419, 2001
Rao CV, Arkin AP
PubMed PDF

Constrained process monitoring: A moving horizon approach
AIChE Journal, 48:97–109, 2002.
Rao CV, Rawlings JB

Constrained linear state estimation - a moving horizon approach
Automatica, 37:1619–1628, 2001
Rao CV, Rawlings JB, Lee JH

Constrained Model Predictive Control: Stability and optimality
Automatica, 36:789-814, 2000
Mayne DQ, Rawlings JB, Rao CV, Scokaert POM

Linear Programming and Model Predictive Control
Journal of Process Control, 10:283–289, 2000
Rao CV, Rawlings, JB

Steady states and constraints in model predictive control
AIChE Journal, 45:1266–1278, 1999
Rao CV, Rawlings JB

Application of Interior-Point Methods to Model Predictive Control
Journal of Optimization Theory and Applications, 99(3):723-757, 1998
Rao CV, Wright SJ, Rawlings JB