Difference between revisions of "Quint Lab:Back Door"

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{{Template:Quint Lab}}
 
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==resources==
 
==resources==
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*[[Quint_Lab:ordering | ordering]]<br>
 
*[[Quint_Lab:ordering | ordering]]<br>
  
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==papers/lab meetings/seminars==
 
==papers/lab meetings/seminars==
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==online tools==
 
==online tools==
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'''oligos:'''
 
'''oligos:'''
 
*[http://eu.idtdna.com/analyzer/Applications/OligoAnalyzer/Default.aspx?c=EU oligo analysis]
 
*[http://eu.idtdna.com/analyzer/Applications/OligoAnalyzer/Default.aspx?c=EU oligo analysis]
*[http://frodo.wi.mit.edu/cgi-bin/primer3/primer3_www.cgi primer3]
+
*[http://www.bioinformatics.nl/cgi-bin/primer3plus/primer3plus.cgi primer3plus]
 
*[http://www.fermentas.com/reviewer/app?page=DuplexAnalysis&service=page duplex analysis]
 
*[http://www.fermentas.com/reviewer/app?page=DuplexAnalysis&service=page duplex analysis]
  
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'''arabidopsis tools:'''
 
'''arabidopsis tools:'''
 +
*[http://www.labutils.de/ rootdetection - automatic measurements of seedling roots and hypocotyls]
 +
*[http://wi.cb.k.u-tokyo.ac.jp/cv/arabimarklet.html arabidopsis database collection]
 
*[http://www.arabidopsis.org/ tair]
 
*[http://www.arabidopsis.org/ tair]
 
*[http://arabidopsis.info/ nasc]
 
*[http://arabidopsis.info/ nasc]
 +
*[http://www.hort.purdue.edu/hort/facilities/greenhouse/101exp.shtml 101 ways to grow arabidopsis]
 
*[http://plantsubq.genomics.purdue.edu/ plants-ubq]
 
*[http://plantsubq.genomics.purdue.edu/ plants-ubq]
 
*[http://signal.salk.edu/ salk t-dnas]
 
*[http://signal.salk.edu/ salk t-dnas]
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*[http://www.jicgenomelab.co.uk/services/genotyping/markers.html JIC microsatellite mapping markers]
 
*[http://www.jicgenomelab.co.uk/services/genotyping/markers.html JIC microsatellite mapping markers]
 
*[http://nypg.bio.nyu.edu/vicogenta/ Vicogenta - comparing genomes to arabidopsis]
 
*[http://nypg.bio.nyu.edu/vicogenta/ Vicogenta - comparing genomes to arabidopsis]
 +
*[http://amigo.geneontology.org/cgi-bin/amigo/term_enrichment AmiGO - Gene Ontology]
 +
*[http://bioinformatics.psb.ugent.be/plaza/ PLAZA]
 +
*[http://helix.wustl.edu/dcaps/dcaps.html dCAPS finder]
  
  
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*[http://www.jicgenomelab.co.uk/services/genotyping/markers.html JIC microsatellite mapping markers]
 
*[http://www.jicgenomelab.co.uk/services/genotyping/markers.html JIC microsatellite mapping markers]
 
*[http://bbc.botany.utoronto.ca/markertracker/index.spy Marker Tracker]
 
*[http://bbc.botany.utoronto.ca/markertracker/index.spy Marker Tracker]
 +
*[http://bergelson.uchicago.edu/a.thaliana-resources Bergelson A.thaliana Resources]
 +
*[http://www.onekp.com/ The 1kp project - 1000 plant genomes]
  
 
'''calculators:'''
 
'''calculators:'''
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*[http://www.sigmaaldrich.com/Life_Science/Molecular_Biology/PCR/Key_Resources/PCR_Tools.html pcr mastermix calculator]
 
*[http://www.sigmaaldrich.com/Life_Science/Molecular_Biology/PCR/Key_Resources/PCR_Tools.html pcr mastermix calculator]
 
*[[Media:Stammloesung.swf|Konzrechner]]
 
*[[Media:Stammloesung.swf|Konzrechner]]
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==white board==
 
==white board==
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*[http://www.johnkyrk.com/evolution.html evolution time line animated]
 +
*[https://www.youtube.com/watch?v=xJG0ir9nDtc lab safety rap]
 +
*[http://192.124.243.170/wordpress AG Quint - Lab Blog]
 +
*[http://www.metablast.org/downloads - Meta!Blast real-time 3D action-adventure game to explore the vivid, dynamic world of a soybean plant cell - might be worth a try!]
 +
*[http://dfg-science-tv.de/ DFG Science TV]: Forscher stellen ihre eigenen Projekte vor
 +
*[http://www.thirteen.org/naturally-obsessed/ Naturally Obsessed: The making of a Scientist - documentary]
 
*[http://trailblazing.royalsociety.org/? historical papers of the royal society]
 
*[http://trailblazing.royalsociety.org/? historical papers of the royal society]
 
*[http://professorsciencemusic.googlepages.com/home professor science]
 
*[http://professorsciencemusic.googlepages.com/home professor science]
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*[http://bitesizebio.com/2008/04/02/quick-and-dirty-screening-for-cloned-inserts/ quick and dirty] screening for cloned inserts
 
*[http://bitesizebio.com/2008/04/02/quick-and-dirty-screening-for-cloned-inserts/ quick and dirty] screening for cloned inserts
 
*awesome video → [http://www.studiodaily.com/main/technique/tprojects/6850.html cellular visions: the inner life of a cell]
 
*awesome video → [http://www.studiodaily.com/main/technique/tprojects/6850.html cellular visions: the inner life of a cell]
 +
*[http://www.jove.com Journal of Visualized Experiments]
  
  
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'''''arabidopsis'''''
 
'''''arabidopsis'''''
 +
*[[Media:southern.pdf | southern blot]]
 
*[[Quint_Lab:arabidopsis dna isolation - quick and dirty | arabidopsis dna isolation - quick and dirty]]
 
*[[Quint_Lab:arabidopsis dna isolation - quick and dirty | arabidopsis dna isolation - quick and dirty]]
 
*[[Quint_Lab:arabidopsis transformation | arabidopsis transformation]]
 
*[[Quint_Lab:arabidopsis transformation | arabidopsis transformation]]
 
*[[Quint_Lab:arabidopsis protoplast transformation | arabidopsis protoplast transformation]]
 
*[[Quint_Lab:arabidopsis protoplast transformation | arabidopsis protoplast transformation]]
*[[Quint_Lab:arabidopsis rna isolation from siliques | arabidopsis rna isolation from siliques]]
+
*[[Quint_Lab:arabidopsis rna isolation protocols (including siliques) | arabidopsis rna isolation protocols (including siliques)]]
*[[Quint_Lab:arabidopsis rna isolation from vegetative tissues | arabidopsis rna isolation from vegetative tissues]]
 
 
*[[Quint_Lab:transient transformation and expression| transient transformation and expression]]
 
*[[Quint_Lab:transient transformation and expression| transient transformation and expression]]
 
*[[Quint_Lab:kanamycin selection of transgenic seeds | kanamycin selection of transgenic seeds]]
 
*[[Quint_Lab:kanamycin selection of transgenic seeds | kanamycin selection of transgenic seeds]]
 +
*[[Media:basta.pdf |  selection of transgenic seeds on basta plates ]]
 
*[[Quint_Lab:ems mutagenesis | ems mutagenesis]]
 
*[[Quint_Lab:ems mutagenesis | ems mutagenesis]]
 
*[[Quint_Lab:ats plates | ats plates]]
 
*[[Quint_Lab:ats plates | ats plates]]

Revision as of 00:32, 4 March 2013

QuintLab.jpg

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<wikionly>|width=395px style="padding: 5px; background-color: #ffffff; border: 2px solid #000101;" |

resources

papers/lab meetings/seminars

</wikionly>

online tools

dna/protein analysis:


oligos:


blasts/alignments:


arabidopsis tools:


medicago tools:


natural variation/polymorphisms:

calculators:

white board


lab protocols

→ check also openwetware protocols

e. coli

agros

arabidopsis

yeast
→ for general yeast handling follow Clontech Yeast Protocols Handbook
→ for Y2H follow Clontech Matchmaker Library Construction & Screening Kit


general