PHYC500/2007F

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Spring 2007 Physics 500 and Physics 400

PHYC500 Logo3.gif

Home        Schedule        People        Interactions        Supporting Material        Help       

Welcome to the wiki site for our seminar series on Biophysics and Medicine!

Check the Help page for information on how to officially enroll in the course.

The entire OWW site (of which this course is a part) is viewable by the entire world but editable only by registered users.

Any page that begins with "PHYC500/2007" is a page we have created specifically for this course. If you create a page (please do!) and it is intended for this course, then make sure is starts with "PHYC500/2007". For example, PHYC500/2007:Sandbox.


How to participate

If you are enrolled or want to participate, you should do this (others, please edit to make more clear!):

  1. Get an account on OpenWetWare. Go here: OpenWetWare:How_to_join. In the box for "why to join" just say you're in this course (UNM: Physics 500, Steve Koch instructor). Shouldn't be any problem.
  2. Figure out the basics of wiki. Try here: PHYC500/2007:Sandbox, you can do whatever you want to this page.
  3. Set up your user page. See the top of the page, click on your name to edit. Maybe put your name, major, etc. A picture would be great.
  4. Contribute! Maybe a good start is here: PHYC500/2007:Interactions

Goals of the wiki

  • Encourage more discussions about the seminars or just about biophysics or science in general
  • Place to put links to slides or supplemental information
  • Other?

Recent updates to the course

19 April 2018

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Xromm‎‎ (2 changes | history) . . (+708). . [Aolsen‎ (2×)]

     

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(cur | prev) . . (-767). . Aolsen (talk | contribs)

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(cur | prev) . . (+1,475). . Aolsen (talk | contribs) (Created page with "{{back to protocols}} X-ray Reconstruction of Moving Morphology (XROMM) is a 3D imaging technology, developed at Brown University, for visualizing rapid skeletal movement in v...")

     08:40  Taylor:Publications‎ (diff | hist) . . (+18). . Lynne S. Taylor (talk | contribs) (PUBLICATIONS)
     07:22  Lee:JC‎ (diff | hist) . . (+166). . Wooin Lee (talk | contribs) (Lab meeting schedule)

18 April 2018

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X-Lab‎‎ (4 changes | history) . . (0). . [ChanEngr‎ (4×)]

     

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User:Korey Griffin‎‎ (2 changes | history) . . (+32). . [Korey Griffin‎ (2×)]

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(cur | prev) . . (-47). . Korey Griffin (talk | contribs) (Contact)

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(cur | prev) . . (+79). . Korey Griffin (talk | contribs) (Empirical Resources)

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User:Johannes Stuttmann‎‎ (3 changes | history) . . (+4,407). . [Johannes Stuttmann‎ (3×)]

     

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(cur | prev) . . (+1,692). . Johannes Stuttmann (talk | contribs)

     

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(cur | prev) . . (+2,470). . Johannes Stuttmann (talk | contribs)

     

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(cur | prev) . . (+245). . Johannes Stuttmann (talk | contribs)

     13:02  Hydrochloric acid‎ (diff | hist) . . (+1). . Yar (talk | contribs) (typing error from user email)

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(User creation log). .

[Yar‎ (2×)]

     

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. . User account Ally B (talk | contribs) was created by Yar (talk | contribs) and password was sent by email ‎

     

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. . User account Jakob (talk | contribs) was created by Yar (talk | contribs) and password was sent by email ‎

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BIOL478/S18:Microarray Data Analysis‎‎ (24 changes | history) . . (+34,776). . [Kam D. Dahlquist‎ (24×)]

     

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(cur | prev) . . (-70). . Kam D. Dahlquist (talk | contribs) (Gridding and Generating Intensity Data: remove old Brightspace link)

     

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(cur | prev) . . (+1). . Kam D. Dahlquist (talk | contribs) (GenePix Pro Protocol (Steps 1-3): fix Brightspace link to raw data)

     

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(cur | prev) . . (+1,241). . Kam D. Dahlquist (talk | contribs) (Before We Begin: add section on lab notebook)

     

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(cur | prev) . . (0). . Kam D. Dahlquist (talk | contribs) (Background: fix list formatting)

     

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(cur | prev) . . (+108). . Kam D. Dahlquist (talk | contribs) (Background: add GRNsight)

     

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(cur | prev) . . (+3,845). . Kam D. Dahlquist (talk | contribs) (Identifying regulatory transcription factors responsible for observed changes in gene expression (step 10): paste in GRNsight instructions)

     

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(cur | prev) . . (+3,072). . Kam D. Dahlquist (talk | contribs) (Identifying regulatory transcription factors responsible for observed changes in gene expression (step 10): paste in protocol from Biomath modeling, modify for HMO1)

     

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(cur | prev) . . (+114). . Kam D. Dahlquist (talk | contribs) (Clustering and GO Term Enrichment with stem (steps 7-8): add section for step 10)

     

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(cur | prev) . . (-751). . Kam D. Dahlquist (talk | contribs) (Clustering and GO Term Enrichment with stem (steps 7-8): delete comment, emphasize to unzip)

     

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(cur | prev) . . (0). . Kam D. Dahlquist (talk | contribs) (Modified t test for each timepoint: fix formula)

     

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(cur | prev) . . (+52). . Kam D. Dahlquist (talk | contribs) (Sanity Check: Number of genes significantly changed: add label to link)

     

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(cur | prev) . . (+29). . Kam D. Dahlquist (talk | contribs) (Sanity Check: Number of genes significantly changed: add link to xkcd comic)

     

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(cur | prev) . . (-360). . Kam D. Dahlquist (talk | contribs) (replace opi1 with hmo1)

     

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(cur | prev) . . (+18). . Kam D. Dahlquist (talk | contribs) (replace wt with dHMO1)

     

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(cur | prev) . . (+36). . Kam D. Dahlquist (talk | contribs) (Modified t test for each timepoint: replace wt with dHMO1)

     

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(cur | prev) . . (-22). . Kam D. Dahlquist (talk | contribs) (Looking at the raw data: fix links to SGD)

     

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(cur | prev) . . (+3). . Kam D. Dahlquist (talk | contribs) (Downloading the Data: change to hmo1)

     

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(cur | prev) . . (+35). . Kam D. Dahlquist (talk | contribs) (Statistical Analysis (Step 6): change to delta-hmo1)

     

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(cur | prev) . . (+61). . Kam D. Dahlquist (talk | contribs) (GenePix Pro Protocol (Steps 1-3): note that this will be demo'd, change opi1 to hmo1)

     

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(cur | prev) . . (+27). . Kam D. Dahlquist (talk | contribs) (Background: steps 1-3 done for you)

     

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(cur | prev) . . (+74). . Kam D. Dahlquist (talk | contribs) (Background: add link for YEASTRACT)

     

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(cur | prev) . . (+15). . Kam D. Dahlquist (talk | contribs) (change dates, mention of Windows 10)

     

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(cur | prev) . . (+27,230). . Kam D. Dahlquist (talk | contribs) (paste in from S18)

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(cur | prev) . . (+18). . Kam D. Dahlquist (talk | contribs) (create page with under construction flag)

     10:27  Dahlquist:Protocols‎ (diff | hist) . . (+152). . Kam D. Dahlquist (talk | contribs) (Dry Lab Protocols: create link to BIOL 478 Spring 2018 protocol)

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Crosby:Lab Members‎‎ (2 changes | history) . . (+41). . [Mohammad H. Dezfulian‎ (2×)]

     

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(cur | prev) . . (+71). . Mohammad H. Dezfulian (talk | contribs) (Recent Alumni)

     

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(cur | prev) . . (-30). . Mohammad H. Dezfulian (talk | contribs) (Graduate Students)

     08:35  CAMRI:SeminarSeries‎ (diff | hist) . . (+62). . Lexi E. Crommett (talk | contribs)
     08:00 (Upload log) . . Reinca (talk | contribs) uploaded File:FinalView2.JPG
     01:58  User:Timothee Flutre‎ (diff | hist) . . (+141). . Timothee Flutre (talk | contribs) (Links: add open data repos)

17 April 2018

     23:41  BME100 s2018:Group7 W1030 L6‎ (diff | hist) . . (+454). . Dragos (talk | contribs) (Intro to Computer-Aided Design)

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BME100 s2018:Group8 W0800 L6‎‎ (2 changes | history) . . (+294). . [Leaverjill‎ (2×)]

     

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(cur | prev) . . (+293). . Leaverjill (talk | contribs) (Feature 2: Hardware - PCR Machine & Fluorimeter)

     

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(cur | prev) . . (+1). . Leaverjill (talk | contribs) (Bayesian Statistics)

     23:22  BME100 s2018:Group1 W1030 L6‎ (diff | hist) . . (+8). . Erik Halsband (talk | contribs) (Intro to Computer-Aided Design)