PHYC500/2007

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Spring 2007 Physics 500 and Physics 400

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Welcome to the wiki site for our seminar series on Biophysics and Medicine!

The entire OWW site (of which this course is a part) is viewable by the entire world but editable only by registered users.

Any page that begins with "PHYC500/2007" is a page we have created specifically for this course. If you create a page (please do!) and it is intended for this course, then make sure is starts with "PHYC500/2007". For example, [PHYC500/2007:Sandbox].

Recent updates to the course

19 April 2018

     11:57 

XROMM‎‎ (2 changes | history) . . (+436). . [Aolsen‎ (2×)]

     

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(cur | prev) . . (+108). . Aolsen (talk | contribs)

     

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(cur | prev) . . (+328). . Aolsen (talk | contribs)

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Silver: 2018 Meeting Schedule‎‎ (4 changes | history) . . (+6). . [PamSilver‎ (4×)]

     

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(cur | prev) . . (+2). . PamSilver (talk | contribs) (June)

     

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(cur | prev) . . (0). . PamSilver (talk | contribs)

     

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(cur | prev) . . (+1). . PamSilver (talk | contribs) (May)

     

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(cur | prev) . . (+3). . PamSilver (talk | contribs) (April)

     11:26 (Move log) . . Aolsen (talk | contribs) moved page Xromm to XROMM(Acronym looks better in caps)

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Xromm‎‎ (2 changes | history) . . (+708). . [Aolsen‎ (2×)]

     

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(cur | prev) . . (-767). . Aolsen (talk | contribs)

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(cur | prev) . . (+1,475). . Aolsen (talk | contribs) (Created page with "{{back to protocols}} X-ray Reconstruction of Moving Morphology (XROMM) is a 3D imaging technology, developed at Brown University, for visualizing rapid skeletal movement in v...")

     08:40  Taylor:Publications‎ (diff | hist) . . (+18). . Lynne S. Taylor (talk | contribs) (PUBLICATIONS)
     07:22  Lee:JC‎ (diff | hist) . . (+166). . Wooin Lee (talk | contribs) (Lab meeting schedule)

18 April 2018

     20:43 

X-Lab‎‎ (4 changes | history) . . (0). . [ChanEngr‎ (4×)]

     

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User:Korey Griffin‎‎ (2 changes | history) . . (+32). . [Korey Griffin‎ (2×)]

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(cur | prev) . . (-47). . Korey Griffin (talk | contribs) (Contact)

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(cur | prev) . . (+79). . Korey Griffin (talk | contribs) (Empirical Resources)

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User:Johannes Stuttmann‎‎ (3 changes | history) . . (+4,407). . [Johannes Stuttmann‎ (3×)]

     

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(cur | prev) . . (+1,692). . Johannes Stuttmann (talk | contribs)

     

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(cur | prev) . . (+2,470). . Johannes Stuttmann (talk | contribs)

     

13:09

(cur | prev) . . (+245). . Johannes Stuttmann (talk | contribs)

     13:02  Hydrochloric acid‎ (diff | hist) . . (+1). . Yar (talk | contribs) (typing error from user email)

     12:52 

(User creation log). .

[Yar‎ (2×)]

     

12:52

. . User account Ally B (talk | contribs) was created by Yar (talk | contribs) and password was sent by email ‎

     

12:52

. . User account Jakob (talk | contribs) was created by Yar (talk | contribs) and password was sent by email ‎

N    12:46 

BIOL478/S18:Microarray Data Analysis‎‎ (24 changes | history) . . (+34,776). . [Kam D. Dahlquist‎ (24×)]

     

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(cur | prev) . . (-70). . Kam D. Dahlquist (talk | contribs) (Gridding and Generating Intensity Data: remove old Brightspace link)

     

12:45

(cur | prev) . . (+1). . Kam D. Dahlquist (talk | contribs) (GenePix Pro Protocol (Steps 1-3): fix Brightspace link to raw data)

     

12:16

(cur | prev) . . (+1,241). . Kam D. Dahlquist (talk | contribs) (Before We Begin: add section on lab notebook)

     

12:04

(cur | prev) . . (0). . Kam D. Dahlquist (talk | contribs) (Background: fix list formatting)

     

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(cur | prev) . . (+108). . Kam D. Dahlquist (talk | contribs) (Background: add GRNsight)

     

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(cur | prev) . . (+3,845). . Kam D. Dahlquist (talk | contribs) (Identifying regulatory transcription factors responsible for observed changes in gene expression (step 10): paste in GRNsight instructions)

     

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(cur | prev) . . (+3,072). . Kam D. Dahlquist (talk | contribs) (Identifying regulatory transcription factors responsible for observed changes in gene expression (step 10): paste in protocol from Biomath modeling, modify for HMO1)

     

11:56

(cur | prev) . . (+114). . Kam D. Dahlquist (talk | contribs) (Clustering and GO Term Enrichment with stem (steps 7-8): add section for step 10)

     

11:55

(cur | prev) . . (-751). . Kam D. Dahlquist (talk | contribs) (Clustering and GO Term Enrichment with stem (steps 7-8): delete comment, emphasize to unzip)

     

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(cur | prev) . . (0). . Kam D. Dahlquist (talk | contribs) (Modified t test for each timepoint: fix formula)

     

11:29

(cur | prev) . . (+52). . Kam D. Dahlquist (talk | contribs) (Sanity Check: Number of genes significantly changed: add label to link)

     

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(cur | prev) . . (+29). . Kam D. Dahlquist (talk | contribs) (Sanity Check: Number of genes significantly changed: add link to xkcd comic)

     

11:25

(cur | prev) . . (-360). . Kam D. Dahlquist (talk | contribs) (replace opi1 with hmo1)

     

11:24

(cur | prev) . . (+18). . Kam D. Dahlquist (talk | contribs) (replace wt with dHMO1)

     

11:22

(cur | prev) . . (+36). . Kam D. Dahlquist (talk | contribs) (Modified t test for each timepoint: replace wt with dHMO1)

     

11:20

(cur | prev) . . (-22). . Kam D. Dahlquist (talk | contribs) (Looking at the raw data: fix links to SGD)

     

11:18

(cur | prev) . . (+3). . Kam D. Dahlquist (talk | contribs) (Downloading the Data: change to hmo1)

     

11:07

(cur | prev) . . (+35). . Kam D. Dahlquist (talk | contribs) (Statistical Analysis (Step 6): change to delta-hmo1)

     

10:35

(cur | prev) . . (+61). . Kam D. Dahlquist (talk | contribs) (GenePix Pro Protocol (Steps 1-3): note that this will be demo'd, change opi1 to hmo1)

     

10:33

(cur | prev) . . (+27). . Kam D. Dahlquist (talk | contribs) (Background: steps 1-3 done for you)

     

10:32

(cur | prev) . . (+74). . Kam D. Dahlquist (talk | contribs) (Background: add link for YEASTRACT)

     

10:30

(cur | prev) . . (+15). . Kam D. Dahlquist (talk | contribs) (change dates, mention of Windows 10)

     

10:26

(cur | prev) . . (+27,230). . Kam D. Dahlquist (talk | contribs) (paste in from S18)

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(cur | prev) . . (+18). . Kam D. Dahlquist (talk | contribs) (create page with under construction flag)

     10:27  Dahlquist:Protocols‎ (diff | hist) . . (+152). . Kam D. Dahlquist (talk | contribs) (Dry Lab Protocols: create link to BIOL 478 Spring 2018 protocol)

     09:43 

Crosby:Lab Members‎‎ (2 changes | history) . . (+41). . [Mohammad H. Dezfulian‎ (2×)]

     

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(cur | prev) . . (+71). . Mohammad H. Dezfulian (talk | contribs) (Recent Alumni)

     

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(cur | prev) . . (-30). . Mohammad H. Dezfulian (talk | contribs) (Graduate Students)