PBG298/2007: Readings

From OpenWetWare
Revision as of 14:26, 27 April 2007 by Brian P. Dilkes (talk | contribs)
Jump to: navigation, search
UC Davis PBG298: Polyploid Genetics and Evolution Seminar

PBG289DipTet A Word.jpg

Home        People        Readings        Bibliography        Help       

April 10

Background with Pat!

  1. Otto SP and Whitton J. Polyploid incidence and evolution. Annu Rev Genet. 2000;34:401-437. DOI:10.1146/annurev.genet.34.1.401 | PubMed ID:11092833 | HubMed [OW2000]

April 17

More population genetics of polyploidy!

I did a literature search today and found several interesting papers. I picked two for next week, but in the interest of time, I think we should focus on the first one (Walsh paper). The Comai paper can be background reading for people who want to do a little polyploidy catch-up (like me). Both Genetica and Nature Reviews Genetics are available online through the library.

  1. Walsh B. Population-genetic models of the fates of duplicate genes. Genetica. 2003 Jul;118(2-3):279-94. PubMed ID:12868616 | HubMed [Walsh2003]
I read the beginning of this paper and scanned the rest. It addresses some of the ideas we touched on at the end of the April 10th class. It gets real mathy at the end, but it seems like a well-written paper (aka focus on the text and slide over the math parts).

  1. Comai L. The advantages and disadvantages of being polyploid. Nat Rev Genet. 2005 Nov;6(11):836-46. DOI:10.1038/nrg1711 | PubMed ID:16304599 | HubMed [Comai2005NRG]
Nice review, lots of pretty pictures of difficult to visualize inheritance mechanisms. Introduces some molecular genetic concepts not covered in other two papers.

April 24

Ploidy shifts with Pat and Brian.

The yeast haploid superiority article (Zeyl, 2003, Science below) dovetails nicely with the Walsh reading from April 17 and the Otto review from April 10.

A recent paper on gene duplicate evolution in Teleost fish should further expand on experimental observations related to evolution specific to polyploid contexts.

  1. Zeyl C, Vanderford T, and Carter M. An evolutionary advantage of haploidy in large yeast populations. Science. 2003 Jan 24;299(5606):555-8. DOI:10.1126/science.1078417 | PubMed ID:12543972 | HubMed [Zeyl2003]
  1. Brunet FG, Roest Crollius H, Paris M, Aury JM, Gibert P, Jaillon O, Laudet V, and Robinson-Rechavi M. Gene loss and evolutionary rates following whole-genome duplication in teleost fishes. Mol Biol Evol. 2006 Sep;23(9):1808-16. DOI:10.1093/molbev/msl049 | PubMed ID:16809621 | HubMed [Brunet2006]

May 2

Speciation with Dena

Great paper from the Solti, Pires, and Leitch groups from a meeting proceedings at Kew Gardens. Demonstrates that in this case the species barrier was not overcome just once in a freak accident.

Polyploid tree frogs unite to form a complex interspecies swarm. Demonstrates recurrent polyploid formation can play a role in animal polyploid speciation too. Go frogs.