Difference between revisions of "Nescent ngs 2011:Notebook/nescent ngs 2011"

From OpenWetWare
Jump to: navigation, search
m (Notes)
m (Notes)
Line 60: Line 60:
 
* Further analyses
 
* Further analyses
 
* Visualization
 
* Visualization
 +
** [http://www.broadinstitute.org/igv/ IGV]
 
** [http://bioinf.scri.ac.uk/tablet/ Tablet]
 
** [http://bioinf.scri.ac.uk/tablet/ Tablet]
  

Revision as of 15:15, 1 December 2011

<!-- sibboleth --><div id="lncal1" style="border:0px;"><div style="display:none;" id="id">lncal1</div><div style="display:none;" id="dtext"></div><div style="display:none;" id="page">Nescent ngs 2011:Notebook/nescent ngs 2011</div><div style="display:none;" id="fmt">yyyy/MM/dd</div><div style="display:none;" id="css">OWWNB</div><div style="display:none;" id="month"></div><div style="display:none;" id="year"></div><div style="display:none;" id="readonly">Y</div></div>

Owwnotebook icon.png <sitesearch>title=Search this Project</sitesearch>

Customize your entry pages <html><img src="/images/a/aa/Help.png" border="0" /></html>

Welcome!

  • Share notes and comments from the course and beyond!
  • Nescent hosted course materials are here
  • I found this page very helpful in just getting started
  • Helpful notes and tutorials from the MSU course are here
  • More from a Broad Institute workshop here
  • Some more notes
  • Here's a nice overview of a basic alignment and variant calling workflow based on SAMtools and GATK
  • A more in-depth variant detection strategy based on GATK
  • GAGE

Notes

Please add notes by topic (note that some tools can be used in more than one analysis step):

Useful Links


Recently Edited Notebook Pages