Difference between revisions of "Nescent ngs 2011:Notebook/nescent ngs 2011"

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* Nescent hosted course materials are [https://www.nescent.org/sites/academy/NGS_2011_Course_Materials here]
 
* Nescent hosted course materials are [https://www.nescent.org/sites/academy/NGS_2011_Course_Materials here]
 +
* I found this [http://www.kenkraaijeveld.nl/genomics/bioinformatics/ page] very helpful in just getting started
 
* Helpful notes and tutorials from the MSU course are [http://ged.msu.edu/angus/index.html here]
 
* Helpful notes and tutorials from the MSU course are [http://ged.msu.edu/angus/index.html here]
 
* Some more [http://molecularevolution.org/ notes]
 
* Some more [http://molecularevolution.org/ notes]

Revision as of 12:24, 19 October 2011

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Welcome!

  • Share notes and comments from the course and beyond!
  • Nescent hosted course materials are here
  • I found this page very helpful in just getting started
  • Helpful notes and tutorials from the MSU course are here
  • Some more notes
  • Here's a nice overview of a basic alignment and variant calling workflow based on SAMtools and GATK
  • A more in-depth variant detection strategy based on GATK
  • GAGE

Notes

Please add notes by topic (note that some tools can be used in more than one analysis step):

Useful Links


Recently Edited Notebook Pages