Difference between revisions of "Nescent ngs 2011:Notebook/nescent ngs 2011"

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m (Welcome!)
m (Notes)
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**[http://prinseq.sourceforge.net/ PRINSEQ]
 
**[http://prinseq.sourceforge.net/ PRINSEQ]
 
**[http://hannonlab.cshl.edu/fastx_toolkit/ FASTX-Toolkit]
 
**[http://hannonlab.cshl.edu/fastx_toolkit/ FASTX-Toolkit]
 +
**[http://www.cbcb.umd.edu/software/quake/index.html Quake]
 
* Assembly, de novo
 
* Assembly, de novo
 
**[http://soap.genomics.org.cn/soapdenovo.html SOAPdenovo]
 
**[http://soap.genomics.org.cn/soapdenovo.html SOAPdenovo]

Revision as of 19:12, 11 October 2011

<!-- sibboleth --><div id="lncal1" style="border:0px;"><div style="display:none;" id="id">lncal1</div><div style="display:none;" id="dtext"></div><div style="display:none;" id="page">Nescent ngs 2011:Notebook/nescent ngs 2011</div><div style="display:none;" id="fmt">yyyy/MM/dd</div><div style="display:none;" id="css">OWWNB</div><div style="display:none;" id="month"></div><div style="display:none;" id="year"></div><div style="display:none;" id="readonly">Y</div></div>

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Customize your entry pages <html><img src="/images/a/aa/Help.png" border="0" /></html>

Welcome!

  • Share notes and comments from the course and beyond!
  • Nescent hosted course materials are here
  • Helpful notes and tutorials from the MSU course are here
  • Here's a nice overview of a basic alignment and variant calling workflow based on SAMtools and GATK
  • A more in-depth variant detection strategy based on GATK

Notes

Please add notes by topic (note that some tools can be used in more than one analysis step):

Useful Links


Recently Edited Notebook Pages