Difference between revisions of "Nescent ngs 2011:Notebook/nescent ngs 2011"

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* Nescent hosted course materials are [https://www.nescent.org/sites/academy/NGS_2011_Course_Materials here]
 
* Nescent hosted course materials are [https://www.nescent.org/sites/academy/NGS_2011_Course_Materials here]
 
* [http://sourceforge.net/apps/mediawiki/samtools/index.php?title=SAM_protocol Here]'s a nice overview of a basic alignment and variant calling workflow based on SAMtools and GATK
 
* [http://sourceforge.net/apps/mediawiki/samtools/index.php?title=SAM_protocol Here]'s a nice overview of a basic alignment and variant calling workflow based on SAMtools and GATK
 +
* A more detailed variant calling [http://www.broadinstitute.org/gsa/wiki/index.php/Best_Practice_Variant_Detection_with_the_GATK_v3 strategy] based on GATK
  
 
==Notes==
 
==Notes==

Revision as of 16:28, 20 September 2011

<!-- sibboleth --><div id="lncal1" style="border:0px;"><div style="display:none;" id="id">lncal1</div><div style="display:none;" id="dtext"></div><div style="display:none;" id="page">Nescent ngs 2011:Notebook/nescent ngs 2011</div><div style="display:none;" id="fmt">yyyy/MM/dd</div><div style="display:none;" id="css">OWWNB</div><div style="display:none;" id="month"></div><div style="display:none;" id="year"></div><div style="display:none;" id="readonly">Y</div></div>

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Welcome!

  • Share notes and comments from the course and beyond!
  • Nescent hosted course materials are here
  • Here's a nice overview of a basic alignment and variant calling workflow based on SAMtools and GATK
  • A more detailed variant calling strategy based on GATK

Notes

Please add notes by topic (note that some tools can be used in more than one analysis step):

Useful Links


Recent changes

25 September 2017

     19:56  BME100 f2017:Group9 W0800 L3‎ (diff | hist) . . (+3). . Irene Zhang (talk | contribs) (LAB 3 WRITE-UP)

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