Difference between revisions of "Nescent ngs 2011:Notebook/nescent ngs 2011"

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**[http://bio-bwa.sourceforge.net/ BWA]
 
**[http://bio-bwa.sourceforge.net/ BWA]
 
**[http://www.novocraft.com/main/index.php Novoalign] - primarily useful for resequencing (i.e. aligning against a very similar reference genome); the free version does not support multithreading so be warned, also can email and ask for a license key (1-month free for non-profit users)
 
**[http://www.novocraft.com/main/index.php Novoalign] - primarily useful for resequencing (i.e. aligning against a very similar reference genome); the free version does not support multithreading so be warned, also can email and ask for a license key (1-month free for non-profit users)
**[http://soap.genomics.org.cn/soapaligner.html SOAPaligner/SOAP2]
+
**[http://soap.genomics.org.cn/soapaligner.html SOAPaligner/SOAP2]  
 
* RAD
 
* RAD
 
* Gene discovery and annotation
 
* Gene discovery and annotation
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* Further analyses
 
* Further analyses
 
* Visualization
 
* Visualization
** [http://bioinf.scri.ac.uk/tablet/ Tablet] (I was trying to figure out how to look at SOAP output files and found this - SN)
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** [http://bioinf.scri.ac.uk/tablet/ Tablet]
  
 
==Useful Links==
 
==Useful Links==

Revision as of 09:38, 9 September 2011

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