Difference between revisions of "Nescent ngs 2011:Notebook/nescent ngs 2011"

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(Useful Links)
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* Quality Control
* Quality Control
[http://hannonlab.cshl.edu/fastx_toolkit/ FASTX-Toolkit]
[http://hannonlab.cshl.edu/fastx_toolkit/ FASTX-Toolkit]
[http://sourceforge.net/apps/mediawiki/kmer/ kmer package]
* Assembly, de novo
* Assembly, de novo
[http://soap.genomics.org.cn/soapdenovo.html SOAPdenovo]
[http://soap.genomics.org.cn/soapdenovo.html SOAPdenovo]

Revision as of 12:33, 31 August 2011

<!-- sibboleth --><div id="lncal1" style="border:0px;"><div style="display:none;" id="id">lncal1</div><div style="display:none;" id="dtext"></div><div style="display:none;" id="page">Nescent ngs 2011:Notebook/nescent ngs 2011</div><div style="display:none;" id="fmt">yyyy/MM/dd</div><div style="display:none;" id="css">OWWNB</div><div style="display:none;" id="month"></div><div style="display:none;" id="year"></div><div style="display:none;" id="readonly">Y</div></div>

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  • Share notes and comments from the course!
  • Nescent hosted course materials are here


Please add notes by topic:

  • Library prep and platform related
  • Quality Control

FASTX-Toolkit kmer package

  • Assembly, de novo


  • Alignment

Bowtie Novoalign

  • RAD
  • Gene discovery and annotation
  • Variant calling
  • RNA-seq
  • Phylogenomics
  • Further analyses

Useful Links

Recently Edited Notebook Pages