Matthew E. Jurek Week 14: Difference between revisions

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{{Matthew E. Jurek}}
{{Matthew E. Jurek}}
===Electronic Laboratory Notebook===
===Electronic Laboratory Notebook===
1. Began by opening the sample data and renaming it to Jurek_Week14 before beginning manipulations.
#. Began by opening the sample data and renaming it to Jurek_Week14 before beginning manipulations.
2.My network consists of 23 transcription factors based on the Week 12 Assignment. The Regulation Matrix has been copied onto the 3 appropriate worksheets: network, network_weights, and network_thresholds. The transcription factors are not in alphabetical order, rather I will keep them in the order generated by Yeastract, ensuring each worksheet utilizes the same order. Following the important step in, HMO1 was deleted from my network as that is the gene I was assigned. My worksheets have been adjusted accordingly.
#.My network consists of 23 transcription factors based on the Week 12 Assignment. The Regulation Matrix has been copied onto the 3 appropriate worksheets: network, network_weights, and network_thresholds. The transcription factors are not in alphabetical order, rather I will keep them in the order generated by Yeastract, ensuring each worksheet utilizes the same order. Following the important step in, HMO1 was deleted from my network as that is the gene I was assigned. My worksheets have been adjusted accordingly.
#The standard names have been copied and pasted into Yeastract. I have now received the systematic name and have placed them in the appropriate column. The degradation rates are being explored according to the Belle et al. data. Only about 4 transcription factors are not on this list, thus warranting a rate of .027182242.

Revision as of 19:03, 25 April 2013

Matthew E. Jurek BIOL398-03/S13

Assignment Page

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Electronic Laboratory Notebook

  1. . Began by opening the sample data and renaming it to Jurek_Week14 before beginning manipulations.
  2. .My network consists of 23 transcription factors based on the Week 12 Assignment. The Regulation Matrix has been copied onto the 3 appropriate worksheets: network, network_weights, and network_thresholds. The transcription factors are not in alphabetical order, rather I will keep them in the order generated by Yeastract, ensuring each worksheet utilizes the same order. Following the important step in, HMO1 was deleted from my network as that is the gene I was assigned. My worksheets have been adjusted accordingly.
  3. The standard names have been copied and pasted into Yeastract. I have now received the systematic name and have placed them in the appropriate column. The degradation rates are being explored according to the Belle et al. data. Only about 4 transcription factors are not on this list, thus warranting a rate of .027182242.
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