Maloof Lab:Jose M. Jimenez-Gomez

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Room 2115
Section of Plant Biology
1002 Life Sciences, One Shields Ave.
University of California Davis
Davis, CA 95616


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Jose M Jimenez-Gomez, PhD.


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I am a Postdoctoral fellow in Julin Maloof's lab in the Section of Plant Biology at the University of California Davis.

In 2005, I completed my PhD. in JM Martinez-Zapater's lab at the CNB (National Center for Biotechnology) in Madrid, Spain, where I performed a quantitative genetic analysis of flowering time in tomato.

QTL analysis of the shade avoidance response in Arabidopsis

Plants form different environments present different degrees of responsiveness to the same light stimulus. For example, when plants accommodated to sunny environments detect foliar shade from neighboring vegetation they respond growing faster, with taller stems and longer leaves, a phenomenon called the "shade avoidance response". On the other hand, plants surrounded by tall vegetation, used to the shade and do not present this response. To identify the molecular mechanisms underlying this differences we are performing QTL analysis using a previously developed, well characterized Recombinant Inbred Line set descent from two different natural populations of Arabidopsis thaliana: Bayreuth from German low altitude, fallow lands, and Shahdara, from the high mountains of Tadjikistan.
We grew replicated individual RILs in environments simulating shade and sun conditions and measured them for a number of traits characteristic of the shade avoidance response syndrome. For the QTL analysis we modeled this phenotipic data to calculate a response index and used an available map that includes more than 500 markers.
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My main interests include genomics, bioinformatics and plant genetics, as tools for studying natural variation and evolution. I am currently involved in the study of the evolution of plants responses to different light environments.
My research focuses in the changes produced at the molecular level during evolution. In order to do so, I analyze the vast variation in light responses existing in nature, as well as the effect that domestication has in the way that plants perceive and respond to light.

A more detailed explanation on plant adaptation, responses to light and molecular evolution can be found at the Maloof lab webpage.