Difference between revisions of "Lidstrom:Journal Club"

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(Journal Club Schedule)
(Journal Club Schedule)
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| align="center" style="background:#f0f0f0;"|'''Paper'''
| align="center" style="background:#f0f0f0;"|'''Paper'''
| align="center" style="background:#f0f0f0;"|'''Snack Provider'''
| align="center" style="background:#f0f0f0;"|'''Snack Provider'''
| 2014/08/08 || Amanda|| [http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1003483#pcbi-1003483-g004 Pathway Thermodynamics Highlights Kinetic Obstacles in Central Metabolism] || ???
| 2014/08/01 || Aaron|| [http://www.ncbi.nlm.nih.gov/pubmed/20868748 Rozova ON et al. Characterization of recombinant pyrophosphate-dependent 6-phosphofructokinase from halotolerant methanotroph Methylomicrobium alcaliphilum 20Z. ''Res Microbiol'' (2010).] || Janet
| 2014/08/01 || Aaron|| [http://www.ncbi.nlm.nih.gov/pubmed/20868748 Rozova ON et al. Characterization of recombinant pyrophosphate-dependent 6-phosphofructokinase from halotolerant methanotroph Methylomicrobium alcaliphilum 20Z. ''Res Microbiol'' (2010).] || Janet

Revision as of 09:26, 1 August 2014

Back to Lidstrom

The Lidstrom Lab journal club is held from 9:30-10:30 AM on Fridays in the 4th floor conference room.

Journal Club Schedule

Date Presenter Paper Snack Provider
2014/08/08 Amanda Pathway Thermodynamics Highlights Kinetic Obstacles in Central Metabolism  ???
2014/08/01 Aaron Rozova ON et al. Characterization of recombinant pyrophosphate-dependent 6-phosphofructokinase from halotolerant methanotroph Methylomicrobium alcaliphilum 20Z. Res Microbiol (2010). Janet
2014/07/18 Alexey Ramezani M et al. Improved Modeling of Bubble Column Reactors by Considering the Bubble Size Distribution. I&EC Research (2012)  :(
2014/07/11 Frances Chen KH et al. Bacteriohemerythrin bolsters the activity of the pMMO in Methylococcus capsulatus (Bath). J Inorg Biochem (2012). Amanda
2014/06/27 Amanda, Janet, & Aaron Metabolic Engineering X Conference Recap  :(
2014/06/13 Bo Paddon CJ et al. High-level semi-synthetic production of the potent antimalarial artemisinin. Nature (2013). Maria
2014/05/30 Mila Kemp MB & Quayle JR. Microbial growth on C1 compounds. Incorporation of C1 units into allulose phosphate by extracts of Pseudomonas methanica. Biochem J (1966). Mila
2014/05/23 Aaron Crombie AT & Murrell JC. Trace-gas metabolic versatility of the facultative methanotroph Methylocella silvestris. Nature (2014). Mila
2014/05/16 Maria Chauhan A et al. Composition of methane-oxidizing bacterial communities as a function of nutrient loading in the Florida everglades. Microb Ecol (2012). Mila
2014/05/09 Amanda Chou H & Keasling JD. Programming adaptive control to evolve increased metabolite production. Nat Comm (2013). Janet
2014/05/02 Sascha Andrade-Domínguez A et al. Eco-evolutionary feedbacks drive species interactions. ISME J (2014). Mila
2014/04/25 Bo Lan EL & Liao JC. ATP drives direct photosynthetic production of 1-butanol in cyanobacteria. Proc Natl Acad Sci (2012). Mila
2014/04/18 Frances Dunfield PF et al. Methane oxidation by an extremely acidophilic bacterium of the phylum Verrucomicrobia. Nature (2007). Bo
2014/04/11 Amanda Dahl RH et al. Engineering dynamic pathway regulation using stress-response promoters. Nat Biotechnol (2013). Frances
2014/03/21 Maria Wieczorek AS et al. Organic acids and ethanol inhibit the oxidation of methane by mire methanotrophs. FEMS Microbiol Ecol (2011). Aaron
2014/03/14 Sascha Dam B et al. Ammonium induces differential expression of methane and nitrogen metabolism-related genes in Methylocystis sp. strain SC2. Environ Microbiol (2013). Amanda
2014/02/28 Aaron Bogorad IW et al. Synthetic non-oxidative glycolysis enables complete carbon conservation. Nature (2013). Maria
2014/02/21 Janet Jiang W et al. RNA-guided editing of bacterial genomes using CRISPR-Cas systems. Nat Biotechnol (2013). Igor
2014/02/14 Dave Gomaa AA et al. Programmable Removal of Bacterial Strains by Use of Genome-Targeting CRISPR-Cas Systems. mBio (2014). Sascha
2014/02/07 Bo Na D et al. Metabolic engineering of Escherichia coli using synthetic small regulatory RNAs. Nat Biotechnol (2013). Janet
2014/01/31 Alexey Dellomonaco C et al. Engineered reversal of the b-oxidation cycle for the synthesis of fuels and chemicals. Nature (2011). Amanda
2014/01/24 Amanda Kudla G et al. Coding-Sequence Determinants of Gene Expression in Escherichia coli. Science (2009). Frances
2014/01/17 Frances Goodman AL et al. Identifying Genetic Determinants Needed to Establish a Human Gut Symbiont in Its Habitat. Cell Host Microbe (2009). Aaron
2014/01/10 Aaron Tamas I et al. The (d)evolution of methanotrophy in the Beijerinckiaceae—a comparative genomics analysis. ISME J (2013). Mila
2013/12/06 Alexey Wen M et al. Production of advanced biofuels in engineered E. Coli. Curr Opin Chem Biol (2013). Amanda
2013/11/22 Mila Kalyuzhnaya MG et al. Highly efficient methane biocatalysis revealed in a methanotrophic bacterium. Nat Commun (2013). Mila
2013/11/15 Dave Lee SJ et al. Control of substrate access to the active site in methane monooxygenase. Nature (2013). Aaron
2013/11/08 Amanda Blount ZD et al. Genomic analysis of a key innovation in an experimental Escherichia coli population. Nature (2012). Yanfen
2013/11/01 Frances Semrau JD et al. Methanobactin and MmoD work in concert to act as the 'copper-switch' in methanotrophs. Environmental Microbiology (2013). Janet
2013/10/25 Bo Dietrich JA et al. Transcription factor-based screens and synthetic selections for microbial small-molecule biosynthesis. ACS Synth Biol (2013). Frances
2013/10/18 Aaron Iguchi H et al. Stimulation of methanotrophic growth in cocultures by cobalamin excreted by rhizobia. Appl Environ Microbiol (2011). Amanda
2013/10/11 Mila Stock M et al. Exploration and prediction of interactions between methanotrophs and heterotrophs. Res Microbiol (2013). Mila
2013/10/04 Alexey Ro DK et al. Production of the antimalarial drug precursor artemisinic acid in engineered yeast. Nature (2006). Igor
2013/09/20 Amanda Barrick JE et al. Genome evolution and adaptation in a long-term experiment with Escherichia coli. Nature (2009). Janet
2013/09/13 Frances Nakagawa T et al. A catalytic role of XoxF1 as La3+-dependent methanol dehydrogenase in Methylobacterium extorquens strain AM1. PLoS One (2012). Bo
2013/09/06 Igor Dekas AE et al. Deep-sea archaea fix and share nitrogen in methane-consuming microbial consortia. Science (2009). Frances
2013/08/30 Mila Haroon MF et al. Anaerobic oxidation of methane coupled to nitrate reduction in a novel archaeal lineage. Nature (2013). Mila
2013/08/23 Amanda Blount ZD et al. Historical contingency and the evolution of a key innovation in an experimental population of Escherichia coli. Proc Natl Acad Sci (2008). Dave
2013/08/16 Yanfen Schuetz R et al. Multidimensional optimality of microbial metabolism. Science (2012). Mila
2013/08/09 Nate Okubo Y et al. Alternative route for glyoxylate consumption during growth on two-carbon compounds by Methylobacterium extorquens AM1. J Bacteriol (2010). Janet
2013/08/02 Aaron Ettwig KF et al. Nitrite-driven anaerobic methane oxidation by oxygenic bacteria. Nature (2010). Amanda
2013/07/26 Alexey Ajikumar PK et al. Isoprenoid pathway optimization for Taxol precursor overproduction in Escherichia coli. Science (2010). Aaron
2013/07/19 Bo Erb TJ et al. Synthesis of C5-dicarboxylic acids from C2-units involving crotonyl-CoA carboxylase/reductase: the ethylmalonyl-CoA pathway. Proc Natl Acad Sci (2007).  :(
2013/07/12 Frances Balasubramanian R et al. Oxidation of methane by a biological dicopper centre. Nature (2010). Amanda
2013/06/28 Aaron Chistoserdova L et al. C1 transfer enzymes and coenzymes linking methylotrophic bacteria and methanogenic Archaea. Science (1998). Frances