Li Lab:Softwares

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  • Whole Genome Phylogeny

Phylogeny Based on Whole Genome as inferred from Complete Information Set Analysis

A Hidden Markov Model for Analyzing ChIP-chip Experiments on Genome Tiling Arrays

A model-based algorithm for finding enriched regions in ChIP-Chip experiments

An integrated webserver for analyzing ChIP-chip data

A intuitive and efficient algorithm for the mapping of millions of query oligonucleotide fragments to the genome of any given length, at least an order of magnitude faster than other popular existing tools

  • Model-based Analysis of ChIP-sequencing (MACS)