Koch Lab:Data/MT Gliding Assay Readme File

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Revision as of 12:30, 18 November 2010 by Andy Maloney (talk | contribs) (Credits)
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This is the readme file for kochlab gliding assay and microtubule tracking data.
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 <img alt="This material is Open Data" border="0"
 src="http://m.okfn.org/images/ok_buttons/od_80x15_blue.png" />


<a rel="license" href="http://creativecommons.org/publicdomain/zero/1.0/"> <img src="http://i.creativecommons.org/l/zero/1.0/88x31.png" style="border-style: none;" alt="CC0" /> </a>
To the extent possible under law, <a href="http://openwetware.org/wiki/Koch_Lab" rel="dct:publisher">Steven J. Koch and other KochLab members</a> has waived all copyright and related or neighboring rights to KochLab Data. This work is published from United States.



Raw data acquired by Andy Maloney. Tracking software by Larry Herskowitz and Steve Koch. Tracking automation by Larry Herskowitz. Data analysis and interpretation by Andy Maloney, Larry Herskowitz, Steve Koch. Kinesin-1 provided by Haiqing Liu (LANL).

Data are licensed CC0, as noted above. You are not required, but if possible it would be cool if you give credit to us in any derived work. Also, we might enjoy working with you if it is productive. Contact info can be found here: Koch_Lab:Contact.


Raw data can be found at the following link.


Our software will all be open-source. However, currently we have not yet gone through the steps to make sourceforge projects. Below is all of the software we used to analyze images, but it will probably be difficult to use without some instructions (which we haven't yet written). Unfortunately, some of even the compiled versions will require a NI-Vision license. Whereas all the source code will require LabVIEW development platform.

Microtubule image tracking, automated

Track smoothing and speed calculation, automated

Group speed analysis, automated

Related Publications

Related Notebook and Other Postings

<html><object width="480" height="385"><param name="movie" value="http://www.youtube.com/v/bPiFvOQsD-I&hl=en_US&fs=1&"></param><param name="allowFullScreen" value="true"></param><param name="allowscriptaccess" value="always"></param><embed src="http://www.youtube.com/v/bPiFvOQsD-I&hl=en_US&fs=1&" type="application/x-shockwave-flash" allowscriptaccess="always" allowfullscreen="true" width="480" height="385"></embed></object></html>
Example with tracks overlayed: <html><object width="425" height="344"><param name="movie" value="http://www.youtube.com/v/heaK44PW5ko&hl=en&fs=1"></param><param name="allowFullScreen" value="true"></param><param name="allowscriptaccess" value="always"></param><embed src="http://www.youtube.com/v/heaK44PW5ko&hl=en&fs=1" type="application/x-shockwave-flash" allowscriptaccess="always" allowfullscreen="true" width="425" height="344"></embed></object></html>