Janet B. Matsen:Best Lab Practices

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Revision as of 13:31, 21 February 2012 by Janet B. Matsen (talk | contribs) ("Did I do that?" (Bench Work))
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Please contact me with questions, comments, and corrections.

Efficiency Versus Thoroughness

I have really come to appreciate the trade-off between thoroughness and efficiency/throughput. If you are overly thorough and careful, things will get done too slowly. If you are overly throughput oriented, errors will occur and you will waste too much time figuring out what went wrong. I am always looking to tune my sweet spot in all of my lab practices, and always looking for tips from others.

Record Keeping

  • Page numbers are usually more useful than dates. I put page numbers (and usually dates) on all tubes I put in the freezer.
  • Keep a digital list of every primer you order that you can query and reference. I number each primer tube and have them arranged chronologically in my freezer.
  • I prefer to use a sketchbook rather than a lab notebook. You can buy them cheaply at art stores, they have bigger pages, and most importantly, they don't have distracting lines. This allows me to flip through pages and look for shapes (eg a table of DNA concentrations or a particular gel) more quickly.

"Did I do that?" (Bench Work)

  • Often we do things with many tubes in parallel, such as screening colonies. One of the worst feelings is having a moment of doubt whether you pipettted into the right well in a strip of PCR tubes or whether you added a particular reagent to a master mix tube. It can happen because tubes in the middle of a row are hard to distinguish, or because a though or conversation distracts you. Tricks I have enjoyed to prevent this:
    • having dogmas about the order you do things in such as "always add VF2 before VR," "always handle the tubes left to right," and "put pen dots next to reagents/steps you have added/done in a list of ingredients/steps."
    • moving my eppendorf tubes from one location in the holder to another once you have taken/added material
      • makes sure you don't forget one or do one twice
    • drawing on my PCR tubes so the wells are grouped in sets of 2-4, or by numbers relevant to how I want to order my samples.
      • This gives me a point of reference when I pipette precious samples around. For example, if I am screening 7 colonies from project A, 4 from project B, 2 from C, and 8 from D, I will use a sharpie to mark the plastic after the 7th, 11th, & 13th tubes.

DNA Manipulation

  • If you are doing something at all complicated, make a cad design of it before you start your DNA work. This will make you sure you have your design right, allow you to check your primers properly, and be available for consultation/sharing at a later date.


  • Science should be fun! Treat everyone well and keep your workplace a pleasant place for everyone to come.