James P. McDonald Week 5: Difference between revisions
From OpenWetWare
Jump to navigationJump to search
(→Exploring Pathway Databases: reactome link) |
(→Saccharomyces Genome Database: fixed grammar in 3rd answer) |
||
Line 9: | Line 9: | ||
**GLN1: expression regulated by nitrogen source and amino acid limitation | **GLN1: expression regulated by nitrogen source and amino acid limitation | ||
**GLT1: expression regulated by nitrogen source | **GLT1: expression regulated by nitrogen source | ||
*There are 56 pathways listed in the database that L-glutamate participates | *There are 56 pathways listed in the database that L-glutamate participates in | ||
*Pathway | *Pathway: | ||
**[http://pathway.yeastgenome.org/YEAST/NEW-IMAGE?type=PATHWAY&object=PWY3O-13 SGD Pathway] | **[http://pathway.yeastgenome.org/YEAST/NEW-IMAGE?type=PATHWAY&object=PWY3O-13 SGD Pathway] | ||
**[[image:SGD_Pathway.jpg]] | **[[image:SGD_Pathway.jpg]] |
Revision as of 00:31, 14 February 2013
Exploring Pathway Databases
Saccharomyces Genome Database
- GDH2 has a homolog in humans. A deficiency of the human homologs, GLUD1 and GLUD2, has been known to cause hyperinsulinism-hyperammonemia syndrome and various neurological disorders.
- Gene Expression Regulation:
- GDH1: expression regulated by nitrogen and carbon sources
- GDH3: expression regulated by nitrogen and carbon sources
- GDH2: expression sensitive to nitrogen catabolite repression and intracellular ammonia levels
- GLN1: expression regulated by nitrogen source and amino acid limitation
- GLT1: expression regulated by nitrogen source
- There are 56 pathways listed in the database that L-glutamate participates in
- Pathway:
KEGG
- KEG Pathway
- The information provided in KEGG is similar to SGD but KEGG includes 3-D structures of the enzymes and AA and NT sequences.
Reactome
Class Links
- James P. McDonald
- BIOL 398 Home Page
- Week 1 Assignment
- Week 2 Assignment
- Week 3 Assignment
- Week 4 Assignment
- Week 5 Assignment
- Week 6 Assignment
- Week 8 Assignment
- Week 9 Assignment
- Week 11 Assignment
- Week 12 Assignment
- Week 13 Assignment
- Week 14 Assignment
Journal Entries and Assignments
- Class Journal Week 1
- Class Journal Week 2
- Class Journal Week 3
- Class Journal Week 4
- Class Journal Week 5
- Class Journal Week 6
- Class Journal Week 8
- Class Journal Week 9
- Class Journal Week 11
- Class Journal Week 12
- Class Journal Week 13
- Class Journal Week 14
- James P. McDonald Week 2
- James P. McDonald Week 3
- James P. McDonald Week 4
- James P. McDonald Week 5
- James P. McDonald Week 6
- James P. McDonald Week 8
- James P. McDonald Week 9
- James P. McDonald Week 11
- James P. McDonald Week 12
- James P. McDonald Week 13
- James P. McDonald Week 14