Difference between revisions of "IGEM:IMPERIAL/2008/New/Appendices"

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&nbsp; <font size=6px color=#E5EBFF><b>Appendices for Dry Lab</b></font>
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= '''Appendices for Dry Lab'''=
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==MATLAB Files==
 
==MATLAB Files==
  
 
===Modelling Motility===
 
===Modelling Motility===
 
*'''[[Media:Getdata.m|Data extraction algorithm. Obtains motility properties from trajectory data]]'''
 
*'''[[Media:Getdata.m|Data extraction algorithm. Obtains motility properties from trajectory data]]'''
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*'''[[Media:Traj.m|Generates trajectory based on generated parameters]]'''
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*'''[[Media:Traj1.m|Generates first run of the trajectory, to be called by modelfit1.m]]'''
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*'''[[Media:Traj2.m|Generates second run of the trajectory, to be called by modelfit2.m ]]'''
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*'''[[Media:Modelfit1.m|Generates parameters for the first run of cell trajectory]]'''
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*'''[[Media:Modelfit2.m‎|Generates parameters for the second run of cell trajectory]]'''
  
 
===Synthetic Video===
 
===Synthetic Video===
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*'''[[Media:Ode.m|The growth of bacteria at a constant growth rate]]'''
 
*'''[[Media:Ode.m|The growth of bacteria at a constant growth rate]]'''
 
*'''[[Media:Test.m|Simulation of the Hill Function]]'''
 
*'''[[Media:Test.m|Simulation of the Hill Function]]'''
*'''[[Nutrient concentration and nutrient as a function of time, both plotted against time]]'''
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*'''[[Media:Test2.m|Nutrient concentration and nutrient as a function of time, both plotted against time]]'''
*'''[[The growth model]]'''
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*'''[[Media:Growth_curve.m|The growth model (N.B. Here the concentration of nutrients with respect to time is assumed to follow the trend given by a piecewise function)]]'''
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*'''[[Media:Growth4.m|The growth model that fits the experimental data]]'''
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*'''[[Media:Test6.m|M-file for generating a plot of results from wetlab]]'''
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*'''[[Media:Experiment_data.xls|Excel spread sheet of Data from experiment + a log graph of experimental results]]'''
  
 
===Modelling Genetic Circuit===
 
===Modelling Genetic Circuit===
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*'''[[Media:Modelling_Growth_Curve.pdf | Dry Lab Tutorial 4: Modelling the Growth Curve]]'''
 
*'''[[Media:Modelling_Growth_Curve.pdf | Dry Lab Tutorial 4: Modelling the Growth Curve]]'''
 
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Latest revision as of 04:27, 30 September 2008

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  Appendices for Dry Lab

MATLAB Files

Modelling Motility

Synthetic Video

Probabilistic Methods

Modelling Growth

Modelling Genetic Circuit

Tutorials

The following are four tutorials which introduce us to data analysis and modelling. The tutorials are focused on the above approach. MATLAB codes used for data analysis can be found in the final link.



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