IGEM:Harvard/2006/Background Reading

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Synthetic Biology

  1. Endy D. Foundations for engineering biology. Nature. 2005 Nov 24;438(7067):449-53. DOI:10.1038/nature04342 | PubMed ID:16306983 | HubMed [sb1]
  2. Gardner TS, Cantor CR, and Collins JJ. Construction of a genetic toggle switch in Escherichia coli. Nature. 2000 Jan 20;403(6767):339-42. DOI:10.1038/35002131 | PubMed ID:10659857 | HubMed [sb2]
  3. Elowitz MB and Leibler S. A synthetic oscillatory network of transcriptional regulators. Nature. 2000 Jan 20;403(6767):335-8. DOI:10.1038/35002125 | PubMed ID:10659856 | HubMed [sb3]
All Medline abstracts: PubMed | HubMed


Cyanobacteria

  1. Takigawa-Imamura H and Mochizuki A. Transcriptional autoregulation by phosphorylated and non-phosphorylated KaiC in cyanobacterial circadian rhythms. J Theor Biol. 2006 Jul 21;241(2):178-92. DOI:10.1016/j.jtbi.2005.11.013 | PubMed ID:16387328 | HubMed [cyano1]
  2. Kutsuna S, Nakahira Y, Katayama M, Ishiura M, and Kondo T. Transcriptional regulation of the circadian clock operon kaiBC by upstream regions in cyanobacteria. Mol Microbiol. 2005 Sep;57(5):1474-84. DOI:10.1111/j.1365-2958.2005.04781.x | PubMed ID:16102014 | HubMed [cyano2]
All Medline abstracts: PubMed | HubMed

Circadian Rhythm in Cyanobacteria

  1. Kucho K, Okamoto K, Tsuchiya Y, Nomura S, Nango M, Kanehisa M, and Ishiura M. Global analysis of circadian expression in the cyanobacterium Synechocystis sp. strain PCC 6803. J Bacteriol. 2005 Mar;187(6):2190-9. DOI:10.1128/JB.187.6.2190-2199.2005 | PubMed ID:15743968 | HubMed [cyano1]
  2. Kondo T and Ishiura M. The circadian clock of cyanobacteria. Bioessays. 2000 Jan;22(1):10-5. DOI:10.1002/(SICI)1521-1878(200001)22:1<10::AID-BIES4>3.0.CO;2-A | PubMed ID:10649285 | HubMed [cyano2]
  3. Lemeille S, Latifi A, and Geiselmann J. Inferring the connectivity of a regulatory network from mRNA quantification in Synechocystis PCC6803. Nucleic Acids Res. 2005;33(10):3381-9. DOI:10.1093/nar/gki654 | PubMed ID:15944453 | HubMed [cyano3]
  4. Liu Y, Tsinoremas NF, Johnson CH, Lebedeva NV, Golden SS, Ishiura M, and Kondo T. Circadian orchestration of gene expression in cyanobacteria. Genes Dev. 1995 Jun 15;9(12):1469-78. PubMed ID:7601351 | HubMed [cyano4]
  5. Nishiwaki T, Satomi Y, Nakajima M, Lee C, Kiyohara R, Kageyama H, Kitayama Y, Temamoto M, Yamaguchi A, Hijikata A, Go M, Iwasaki H, Takao T, and Kondo T. Role of KaiC phosphorylation in the circadian clock system of Synechococcus elongatus PCC 7942. Proc Natl Acad Sci U S A. 2004 Sep 21;101(38):13927-32. DOI:10.1073/pnas.0403906101 | PubMed ID:15347812 | HubMed [cyano5]
  6. Nakajima M, Imai K, Ito H, Nishiwaki T, Murayama Y, Iwasaki H, Oyama T, and Kondo T. Reconstitution of circadian oscillation of cyanobacterial KaiC phosphorylation in vitro. Science. 2005 Apr 15;308(5720):414-5. DOI:10.1126/science.1108451 | PubMed ID:15831759 | HubMed [cyano6]
  7. Tsinoremas NF, Ishiura M, Kondo T, Andersson CR, Tanaka K, Takahashi H, Johnson CH, and Golden SS. A sigma factor that modifies the circadian expression of a subset of genes in cyanobacteria. EMBO J. 1996 May 15;15(10):2488-95. PubMed ID:8665856 | HubMed [cyano7]
  8. Xu Y, Mori T, and Johnson CH. Cyanobacterial circadian clockwork: roles of KaiA, KaiB and the kaiBC promoter in regulating KaiC. EMBO J. 2003 May 1;22(9):2117-26. DOI:10.1093/emboj/cdg168 | PubMed ID:12727878 | HubMed [cyano8]
All Medline abstracts: PubMed | HubMed

This is just scratching the surface - do a PubMed search for "circadian cyanobacteria" and you'll find hundreds of papers.