Difference between revisions of "IGEM:Harvard/2006/Background Reading"

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__TOC__
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==Synthetic Biology==
 
==Synthetic Biology==
 
<biblio>
 
<biblio>
 
# sb1 pmid=16306983
 
# sb1 pmid=16306983
 +
# sb2 pmid=10659857
 +
# sb3 pmid=10659856
 
</biblio>
 
</biblio>
 +
<br>
  
 
==DNA Nanotechnology==
 
==DNA Nanotechnology==
 
<biblio>
 
<biblio>
# dna0 pmid=14961116
+
# dna0 pmid=14961116
 
# dna1 pmid=15583715
 
# dna1 pmid=15583715
 
# dna2 pmid=15600335
 
# dna2 pmid=15600335
Line 12: Line 17:
 
# dna4 pmid=16041813
 
# dna4 pmid=16041813
 
# dna5 pmid=16541064
 
# dna5 pmid=16541064
# dna6 pmid=16614450
 
 
</biblio>
 
</biblio>
 +
<br>
 +
 +
==Circadian Rhythm in Cyanobacteria==
 +
<biblio>
 +
# cyano1 pmid=15743968
 +
# cyano2 pmid=10649285
 +
# cyano3 pmid=15944453
 +
# cyano4 pmid=7601351
 +
# cyano5 pmid=15347812
 +
# cyano6 pmid=15831759
 +
# cyano7 pmid=8665856
 +
# cyano8 pmid=12727878
 +
# cyano9 pmid=15893664
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# cyano10 pmid=16729054
 +
</biblio>
 +
 +
This is just scratching the surface - do a PubMed search for "circadian cyanobacteria" and you'll find hundreds of papers.

Latest revision as of 10:38, 10 July 2006

Synthetic Biology

  1. Endy D. Foundations for engineering biology. Nature. 2005 Nov 24;438(7067):449-53. DOI:10.1038/nature04342 | PubMed ID:16306983 | HubMed [sb1]
  2. Gardner TS, Cantor CR, and Collins JJ. Construction of a genetic toggle switch in Escherichia coli. Nature. 2000 Jan 20;403(6767):339-42. DOI:10.1038/35002131 | PubMed ID:10659857 | HubMed [sb2]
  3. Elowitz MB and Leibler S. A synthetic oscillatory network of transcriptional regulators. Nature. 2000 Jan 20;403(6767):335-8. DOI:10.1038/35002125 | PubMed ID:10659856 | HubMed [sb3]
All Medline abstracts: PubMed | HubMed


DNA Nanotechnology

  1. Shih WM, Quispe JD, and Joyce GF. A 1.7-kilobase single-stranded DNA that folds into a nanoscale octahedron. Nature. 2004 Feb 12;427(6975):618-21. DOI:10.1038/nature02307 | PubMed ID:14961116 | HubMed [dna0]
  2. Rothemund PW, Papadakis N, and Winfree E. Algorithmic self-assembly of DNA Sierpinski triangles. PLoS Biol. 2004 Dec;2(12):e424. DOI:10.1371/journal.pbio.0020424 | PubMed ID:15583715 | HubMed [dna1]
  3. Rothemund PW, Ekani-Nkodo A, Papadakis N, Kumar A, Fygenson DK, and Winfree E. Design and characterization of programmable DNA nanotubes. J Am Chem Soc. 2004 Dec 22;126(50):16344-52. DOI:10.1021/ja044319l | PubMed ID:15600335 | HubMed [dna2]
  4. Mathieu F, Liao S, Kopatsch J, Wang T, Mao C, and Seeman NC. Six-helix bundles designed from DNA. Nano Lett. 2005 Apr;5(4):661-5. DOI:10.1021/nl050084f | PubMed ID:15826105 | HubMed [dna3]
  5. Nutiu R and Li Y. A DNA-protein nanoengine for "on-demand" release and precise delivery of molecules. Angew Chem Int Ed Engl. 2005 Aug 26;44(34):5464-7. DOI:10.1002/anie.200501214 | PubMed ID:16041813 | HubMed [dna4]
  6. Rothemund PW. Folding DNA to create nanoscale shapes and patterns. Nature. 2006 Mar 16;440(7082):297-302. DOI:10.1038/nature04586 | PubMed ID:16541064 | HubMed [dna5]
All Medline abstracts: PubMed | HubMed


Circadian Rhythm in Cyanobacteria

  1. Kucho K, Okamoto K, Tsuchiya Y, Nomura S, Nango M, Kanehisa M, and Ishiura M. Global analysis of circadian expression in the cyanobacterium Synechocystis sp. strain PCC 6803. J Bacteriol. 2005 Mar;187(6):2190-9. DOI:10.1128/JB.187.6.2190-2199.2005 | PubMed ID:15743968 | HubMed [cyano1]
  2. Kondo T and Ishiura M. The circadian clock of cyanobacteria. Bioessays. 2000 Jan;22(1):10-5. DOI:10.1002/(SICI)1521-1878(200001)22:1<10::AID-BIES4>3.0.CO;2-A | PubMed ID:10649285 | HubMed [cyano2]
  3. Lemeille S, Latifi A, and Geiselmann J. Inferring the connectivity of a regulatory network from mRNA quantification in Synechocystis PCC6803. Nucleic Acids Res. 2005;33(10):3381-9. DOI:10.1093/nar/gki654 | PubMed ID:15944453 | HubMed [cyano3]
  4. Liu Y, Tsinoremas NF, Johnson CH, Lebedeva NV, Golden SS, Ishiura M, and Kondo T. Circadian orchestration of gene expression in cyanobacteria. Genes Dev. 1995 Jun 15;9(12):1469-78. PubMed ID:7601351 | HubMed [cyano4]
  5. Nishiwaki T, Satomi Y, Nakajima M, Lee C, Kiyohara R, Kageyama H, Kitayama Y, Temamoto M, Yamaguchi A, Hijikata A, Go M, Iwasaki H, Takao T, and Kondo T. Role of KaiC phosphorylation in the circadian clock system of Synechococcus elongatus PCC 7942. Proc Natl Acad Sci U S A. 2004 Sep 21;101(38):13927-32. DOI:10.1073/pnas.0403906101 | PubMed ID:15347812 | HubMed [cyano5]
  6. Nakajima M, Imai K, Ito H, Nishiwaki T, Murayama Y, Iwasaki H, Oyama T, and Kondo T. Reconstitution of circadian oscillation of cyanobacterial KaiC phosphorylation in vitro. Science. 2005 Apr 15;308(5720):414-5. DOI:10.1126/science.1108451 | PubMed ID:15831759 | HubMed [cyano6]
  7. Tsinoremas NF, Ishiura M, Kondo T, Andersson CR, Tanaka K, Takahashi H, Johnson CH, and Golden SS. A sigma factor that modifies the circadian expression of a subset of genes in cyanobacteria. EMBO J. 1996 May 15;15(10):2488-95. PubMed ID:8665856 | HubMed [cyano7]
  8. Xu Y, Mori T, and Johnson CH. Cyanobacterial circadian clockwork: roles of KaiA, KaiB and the kaiBC promoter in regulating KaiC. EMBO J. 2003 May 1;22(9):2117-26. DOI:10.1093/emboj/cdg168 | PubMed ID:12727878 | HubMed [cyano8]
  9. Wang J. Recent cyanobacterial Kai protein structures suggest a rotary clock. Structure. 2005 May;13(5):735-41. DOI:10.1016/j.str.2005.02.011 | PubMed ID:15893664 | HubMed [cyano9]
  10. Naef F. Circadian clocks go in vitro: purely post-translational oscillators in cyanobacteria. Mol Syst Biol. 2005;1:2005.0019. DOI:10.1038/msb4100027 | PubMed ID:16729054 | HubMed [cyano10]
All Medline abstracts: PubMed | HubMed

This is just scratching the surface - do a PubMed search for "circadian cyanobacteria" and you'll find hundreds of papers.