Difference between revisions of "HughesLab:Publications"

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{{HughesLab}}
 
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==Publications==
 
==Publications==
  
*Li, M.D., Ruan, H.B., Hughes, M.E., Lee, J.S., Singh, J.P., Jones, S.P., Nitabach, M.N., and Yang X. (2013').  O-GlcNAc signaling entrains the circadian clock by modulating BMAL1/CLOCK ubiquitination. '''Cell Metabolism'''. 17(2): 303-310. <br>
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'''2016'''
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*Li, J., Terry, E.E., Fejer, E., Gamba, D., Hartmann, N., Logsdon, J., Michalski, D., Rois, L.E., Scuderi, M.J., Kunst, M., Hughes, M.E. (2016). [http://www.ncbi.nlm.nih.gov/pubmed/27856350 Achilles is a circadian clock-controlled gene that regulates immune function in Drosophila.] '''Brain, Behavior, and Immunity'''. doi: 10.1016/j.bbi.2016.11.012.
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*Wu, G., Anafi, R.C., Hughes, M.E., Kornacker, K., Hogenesch, J.B. (2016). [http://www.ncbi.nlm.nih.gov/pubmed/27378304 MetaCycle: an integrated R package to evaluate periodicity in large scale data.] '''Bioinformatics'''. 32 (21), 3351-3353.
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'''2015'''
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*Li, J., Grant, G., Hogenesch, J.B., Hughes, M.E. (2015). [http://www.ncbi.nlm.nih.gov/pubmed/25662464 Considerations for RNA-seq analysis of circadian rhythms.]  '''Methods in Enzymology'''. doi: 10.1016/bs.mie.2014.10.020
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*Gong, C., Li, C., Qi, X., Song, Z., Wu, J., Hughes, M. E., Li, X. (2015). [https://www.ncbi.nlm.nih.gov/pubmed/26512910 The daily rhythms of mitochondrial gene expression and oxidative stress regulation are altered by aging in the mouse liver.] '''Chronobiology International'''. 32(9): 1254-1263.
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*Tranel, H.R., Schroder, E.A., England, J., Black, W.S., Bush, H., Hughes, M.E., Esser, K.A. Clasey, J.L., (2015). [http://www.ncbi.nlm.nih.gov/pubmed/26101893 Physical activity, and not fat mass is a primary predictor of circadian parameters in young men.] '''Chronobiology International'''. 32(6): 832-841.
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'''2014'''
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*Kunst, M., Hughes, M.E., Barnett, G., Duah, J., Nitabach, M.N. (2014). [http://www.ncbi.nlm.nih.gov/pubmed/25455031 Calcitonin gene-related peptide neurons mediate sleep-specific circadian output in Drosophila.] '''Current Biology'''. 24 (22), 2652-2664.
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*Zhang, R., Lahens, N., Ballance, H., Hughes, M.E., Hogenesch, J.B. (2014). [http://www.ncbi.nlm.nih.gov/pubmed/25349387 A circadian gene expression atlas in mammals: implications for biology and medicine.] '''Proceedings of the National Academy of Sciences'''. doi:10.1073/pnas.1408886111
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*Anafi, R., Lee, Y., Sato, T.K., Venkataraman, A., Ramanathan, C., Kavakli, I.H., Hughes, M.E., Baggs, J.B., Growe, J., Liu, A.C., Kim, J., Hogenesch, J.B. (2014) [http://www.ncbi.nlm.nih.gov/pubmed/24737000 Machine learning helps identify CHRONO as a circadian clock component]. '''PLoS Biology'''. 12(4): e1001840.
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*Hughes, M.E., Peeler, P., Hogenesch, J.B., Trojanowski, J.Q. (2014). [http://www.ncbi.nlm.nih.gov/pubmed/24514750 The growth and impact of Alzheimer Disease Centers as measured by social network analysis.] '''JAMA Neurology'''. 71(4): 412-420.
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'''2013'''
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*Li, M.D., Ruan, H.B., Hughes, M.E., Lee, J.S., Singh, J.P., Jones, S.P., Nitabach, M.N., and Yang X. (2013).  [http://www.ncbi.nlm.nih.gov/pubmed/23395176 O-GlcNAc signaling entrains the circadian clock by modulating BMAL1/CLOCK ubiquitination.] '''Cell Metabolism'''. 17(2): 303-310. <br>
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'''2012'''
 
*Hughes, M.E., Hong, H.K., Chong, J.L., Indacochea, A.A., Lee, S.S., Han, M., Takahashi, J.S., and Hogenesch, J.B. (2012).  [http://www.ncbi.nlm.nih.gov/pubmed/22844252 Brain-specific rescue of Clock reveals system-driven transcriptional rhythms in peripheral tissue.] '''PLoS Genetics'''. 8(7): e1002835.<br>
 
*Hughes, M.E., Hong, H.K., Chong, J.L., Indacochea, A.A., Lee, S.S., Han, M., Takahashi, J.S., and Hogenesch, J.B. (2012).  [http://www.ncbi.nlm.nih.gov/pubmed/22844252 Brain-specific rescue of Clock reveals system-driven transcriptional rhythms in peripheral tissue.] '''PLoS Genetics'''. 8(7): e1002835.<br>
 
*Hughes, M.E., Grant, G., Pacquin, C., and Nitabach, M. (2012). [http://www.ncbi.nlm.nih.gov/pubmed/22472103 Deep sequencing the circadian transcriptome of Drosophila brain.] '''Genome Research'''.  22: 1266-1281.<br>  
 
*Hughes, M.E., Grant, G., Pacquin, C., and Nitabach, M. (2012). [http://www.ncbi.nlm.nih.gov/pubmed/22472103 Deep sequencing the circadian transcriptome of Drosophila brain.] '''Genome Research'''.  22: 1266-1281.<br>  
*Silver, A.C., Arjona, A., Hughes, M.E., Nitabach, M.N., Fikrig, E., (2012). [http://www.ncbi.nlm.nih.gov/pubmed/22019350 Circadian expression of clock genes in mouse macrophages, dendritic cells, and B cells.] '''Brains, Behavior and Immunity'''. 26(3):407-13<br>   
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*Silver, A.C., Arjona, A., Hughes, M.E., Nitabach, M.N., Fikrig, E., (2012). [http://www.ncbi.nlm.nih.gov/pubmed/22019350 Circadian expression of clock genes in mouse macrophages, dendritic cells, and B cells.] '''Brains, Behavior and Immunity'''. 26(3):407-13.<br>   
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'''2011'''
 
*Miyazaki M., Schroder E., Edelmann S.E., Hughes M.E., Balke C.W., Esser K.A. (2011). [http://www.ncbi.nlm.nih.gov/pubmed/22076133 Age-Associated Disruption of Molecular Clock Expression in Skeletal Muscle of the Spontaneously Hypertensive Rat.] '''PLoS ONE'''. 6(11), e27168.<br>  
 
*Miyazaki M., Schroder E., Edelmann S.E., Hughes M.E., Balke C.W., Esser K.A. (2011). [http://www.ncbi.nlm.nih.gov/pubmed/22076133 Age-Associated Disruption of Molecular Clock Expression in Skeletal Muscle of the Spontaneously Hypertensive Rat.] '''PLoS ONE'''. 6(11), e27168.<br>  
 
*Xu, K., Diangelo, J. R., Hughes, M. E., Hogenesch, J. B., and Sehgal, A. (2011). [http://www.ncbi.nlm.nih.gov/pubmed/21641546 The circadian clock interacts with metabolic physiology to influence reproductive fitness.] '''Cell Metabolism'''. 13, 639-654. <br>
 
*Xu, K., Diangelo, J. R., Hughes, M. E., Hogenesch, J. B., and Sehgal, A. (2011). [http://www.ncbi.nlm.nih.gov/pubmed/21641546 The circadian clock interacts with metabolic physiology to influence reproductive fitness.] '''Cell Metabolism'''. 13, 639-654. <br>
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'''2010'''
 
*Hughes, M. E., Hogenesch, J. B., and Kornacker, K. (2010). [http://www.ncbi.nlm.nih.gov/pubmed/20876817 JTK_CYCLE: an efficient nonparametric algorithm for detecting rhythmic components in genome-scale data sets.] '''Journal of Biological Rhythms'''. 25, 372-380.<br>  
 
*Hughes, M. E., Hogenesch, J. B., and Kornacker, K. (2010). [http://www.ncbi.nlm.nih.gov/pubmed/20876817 JTK_CYCLE: an efficient nonparametric algorithm for detecting rhythmic components in genome-scale data sets.] '''Journal of Biological Rhythms'''. 25, 372-380.<br>  
 
*Hughes, M. E., Peeler, J., and Hogenesch, J. B. (2010). [http://www.ncbi.nlm.nih.gov/pubmed/20944088 Network dynamics to evaluate performance of an academic institution.] '''Science Translational Medicine'''. 2, 53ps49.<br>   
 
*Hughes, M. E., Peeler, J., and Hogenesch, J. B. (2010). [http://www.ncbi.nlm.nih.gov/pubmed/20944088 Network dynamics to evaluate performance of an academic institution.] '''Science Translational Medicine'''. 2, 53ps49.<br>   
 
*Baggs, J. E., Hughes, M. E., and Hogenesch, J. B. (2010). [http://www.ncbi.nlm.nih.gov/pubmed/20836017 The network as the target.] '''Wiley Interdiscip. Rev. Syst. Biol. Med.''' 2, 127-133.<br>  
 
*Baggs, J. E., Hughes, M. E., and Hogenesch, J. B. (2010). [http://www.ncbi.nlm.nih.gov/pubmed/20836017 The network as the target.] '''Wiley Interdiscip. Rev. Syst. Biol. Med.''' 2, 127-133.<br>  
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'''2009'''
 
*Hughes, M. E., DiTacchio, L., Hayes, K. R., Vollmers, C., Pulivarthy, S., Baggs, J. E., Panda, S., and Hogenesch, J. B. (2009). [http://www.ncbi.nlm.nih.gov/pubmed/19343201 Harmonics of circadian gene transcription in mammals.] '''PLoS Genetics'''. 5, e1000442.<br>   
 
*Hughes, M. E., DiTacchio, L., Hayes, K. R., Vollmers, C., Pulivarthy, S., Baggs, J. E., Panda, S., and Hogenesch, J. B. (2009). [http://www.ncbi.nlm.nih.gov/pubmed/19343201 Harmonics of circadian gene transcription in mammals.] '''PLoS Genetics'''. 5, e1000442.<br>   
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'''2007'''
 
*Hughes, M., Deharo, L., Pulivarthy, S. R., Gu, J., Hayes, K., Panda, S., and Hogenesch, J. B. (2007). [http://www.ncbi.nlm.nih.gov/pubmed/18419295 High-resolution time course analysis of gene expression from pituitary.] '''Cold Spring Harbor Symposia on Quantitative Biology''' 72, 381-386.<br>   
 
*Hughes, M., Deharo, L., Pulivarthy, S. R., Gu, J., Hayes, K., Panda, S., and Hogenesch, J. B. (2007). [http://www.ncbi.nlm.nih.gov/pubmed/18419295 High-resolution time course analysis of gene expression from pituitary.] '''Cold Spring Harbor Symposia on Quantitative Biology''' 72, 381-386.<br>   
 
*Hughes, M. E., Bortnick, R., Tsubouchi, A., Bäumer, P., Kondo, M., Uemura, T., and Schmucker, D. (2007). [http://www.ncbi.nlm.nih.gov/pubmed/17481395 Homophilic Dscam interactions control complex dendrite morphogenesis.] '''Neuron'''. 54, 417-427. <br>
 
*Hughes, M. E., Bortnick, R., Tsubouchi, A., Bäumer, P., Kondo, M., Uemura, T., and Schmucker, D. (2007). [http://www.ncbi.nlm.nih.gov/pubmed/17481395 Homophilic Dscam interactions control complex dendrite morphogenesis.] '''Neuron'''. 54, 417-427. <br>
 
*Kang, Y. J., Kusler, B., Otsuka, M., Hughes, M., Suzuki, N., Suzuki, S., Yeh, W.-C., Akira, S., Han, J., and Jones, P. P. (2007). [http://www.ncbi.nlm.nih.gov/pubmed/17878357 Calcineurin negatively regulates TLR-mediated activation pathways.] '''Journal of Immunology'''. 179, 4598-4607.<br>  
 
*Kang, Y. J., Kusler, B., Otsuka, M., Hughes, M., Suzuki, N., Suzuki, S., Yeh, W.-C., Akira, S., Han, J., and Jones, P. P. (2007). [http://www.ncbi.nlm.nih.gov/pubmed/17878357 Calcineurin negatively regulates TLR-mediated activation pathways.] '''Journal of Immunology'''. 179, 4598-4607.<br>  
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'''2005'''
 
*Watson, F. L., Püttmann-Holgado, R., Thomas, F., Lamar, D. L., Hughes, M., Kondo, M., Rebel, V. I., and Schmucker, D. (2005). [http://www.ncbi.nlm.nih.gov/pubmed/16109846 Extensive diversity of Ig-superfamily proteins in the immune system of insects.] '''Science'''. 309, 1874-1878.  
 
*Watson, F. L., Püttmann-Holgado, R., Thomas, F., Lamar, D. L., Hughes, M., Kondo, M., Rebel, V. I., and Schmucker, D. (2005). [http://www.ncbi.nlm.nih.gov/pubmed/16109846 Extensive diversity of Ig-superfamily proteins in the immune system of insects.] '''Science'''. 309, 1874-1878.  
  
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Hughes Lab<br>
 
Hughes Lab<br>
[http://www.umsl.edu/~biology/ Department of Biology]<br>
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[https://pulmonary.wustl.edu/ Pulmonary and Critical Care Medicine]<br>
University of Missouri, St. Louis<br>
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Washington University School of Medicine
(Starting in August, 2013)
 

Latest revision as of 13:17, 6 March 2017

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Publications

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2015

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Hughes Lab
Pulmonary and Critical Care Medicine
Washington University School of Medicine