Difference between revisions of "Haynes Lab:Notebook/Investigating Photo-Switchable Synthetic Nucleosomes/2012/12/05"

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|style="background-color: #F2F2F2" align="center"|<html><img src="/images/9/94/Report.png" border="0" /></html> [[{{#sub:{{FULLPAGENAME}}|0|-11}}|Main project page]]<br />{{#if:{{#lnpreventry:{{FULLPAGENAME}}}}|<html><img src="/images/c/c3/Resultset_previous.png" border="0" /></html>[[{{#lnpreventry:{{FULLPAGENAME}}}}{{!}}Previous entry]]<html>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</html>}}{{#if:{{#lnnextentry:{{FULLPAGENAME}}}}|[[{{#lnnextentry:{{FULLPAGENAME}}}}{{!}}Next entry]]<html><img src="/images/5/5c/Resultset_next.png" border="0" /></html>}}
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|style="background-color: #F2F2F2" align="center"|[[File:Report.png|frameless|link={{#sub:{{FULLPAGENAME}}|0|-11}}]][[{{#sub:{{FULLPAGENAME}}|0|-11}}|Main project page]]<br />{{#if:{{#lnpreventry:{{FULLPAGENAME}}}}|[[File:Resultset_previous.png|frameless|link={{#lnpreventry:{{FULLPAGENAME}}}}]][[{{#lnpreventry:{{FULLPAGENAME}}}}{{!}}Previous entry]]&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;}}{{#if:{{#lnnextentry:{{FULLPAGENAME}}}}|[[{{#lnnextentry:{{FULLPAGENAME}}}}{{!}}Next entry]][[File:Resultset_next.png|frameless|link={{#lnnextentry:{{FULLPAGENAME}}}}]]}}
 
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==Entry title==
+
==December 5, 2012==
* Insert content here...
+
'''Results from last 11/23/12 ligation'''
 +
* None of the colonies on any plates grew
 +
* Will retry cloning for each (H2B, LOV) by using the Gibson assembly method
 +
----
  
 +
* Repeat PCR of H2B and LOV inserts with new primers
 +
* Note: Primers add a XbaI site upstream and the SpeI site downstream
 +
* Final Gibson assembly products
 +
# pSB1A3 left end / H2B / LOV +His tag/ pSB1A3 right end
 +
# pSB1A3 left end / LOV / H2B +His tag/ pSB1A3 right end
 +
 +
*For H2B-LOV construct
 +
# H2B-GFP plasmid + 1A3/H2B fwd + H2B/LOV rev
 +
# LOV plasmid + H2B/LOV fwd + LOV+his/1A3 rev
 +
 +
*For LOV-H2B construct
 +
# H2B-GFP plasmid + 1A3/LOV fwd + LOV/H2B rev
 +
# LOV plasmid + LOV/H2B fwd + H2B+his/1A3 rev
 +
 +
Performed table reactions twice: once for those used in H2B-LOV construct, once for those used in LOV-H2B construct
 +
{| class="wikitable" border=1 cellpadding="5" cellspacing="0"
 +
|-
 +
| Reagents || H2B || LOV
 +
|-
 +
| Plasmid DNA || 0.5 μL || 0.5
 +
|-
 +
| primer 1 (10 μM) || 1.0 || 1.0
 +
|-
 +
| primer 2 (10 μM) || 1.0 || 1.0
 +
|-
 +
| 2x GoTaq mix || 12.5 || 12.5
 +
|-
 +
| dH<sub>2</sub>O || 10.0 || 10.0
 +
|-
 +
| Total || 25.0 || 25.0
 +
|}
 +
 +
PCR program:
 +
* 95°C, 3 min.
 +
* [95°C, 30 sec; 57°C, 30 sec.; 72°C, 30 sec.] x35 cycles
 +
* 72°C, 3 min.
 +
* 4°C ∞
 +
 +
* Clean up PCR products using the Zymo Clean and Concentrator kit
 +
* Be sure to elute using 15 μL dH<sub>2</sub>O
 +
 +
{| class="wikitable" border=1 cellpadding="5" cellspacing="0"
 +
|-
 +
|Construct || Product || 260 || 280 || 260/280 || ng/μL
 +
|-
 +
|H2B-LOV || H2B 1 || 0.061 || 0.033 || 1.863 || 60.545
 +
|-
 +
|H2B-LOV || H2B 2 || 0.056 || 0.03 || 1.857 || 56.22
 +
|-
 +
|H2B-LOV || LOV 1 || 0.063 || 0.033 || 1.903 || 62.673
 +
|-
 +
|H2B-LOV || LOV 2 || 0.06 || 0.04 || 1.85 || 59.844
 +
|-
 +
|LOV-H2B || H2B 1 || 0.072 || 0.033 || 1.807 || 72.381
 +
|-
 +
|LOV-H2B || H2B 2 || 0.06 || 0.036 || 1.799 || 59.925
 +
|-
 +
|LOV-H2B || LOV 1 || 0.006 || 0.036 || 1.849 || 65.881
 +
|-
 +
|LOV-H2B || LOV 2 || 0.065 || 0.035 || 1.839 || 65.285
 +
|}
  
 
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Latest revision as of 22:19, 26 September 2017

Owwnotebook icon.png Project name Report.pngMain project page
Resultset previous.pngPrevious entry      Next entryResultset next.png

December 5, 2012

Results from last 11/23/12 ligation

  • None of the colonies on any plates grew
  • Will retry cloning for each (H2B, LOV) by using the Gibson assembly method

  • Repeat PCR of H2B and LOV inserts with new primers
  • Note: Primers add a XbaI site upstream and the SpeI site downstream
  • Final Gibson assembly products
  1. pSB1A3 left end / H2B / LOV +His tag/ pSB1A3 right end
  2. pSB1A3 left end / LOV / H2B +His tag/ pSB1A3 right end
  • For H2B-LOV construct
  1. H2B-GFP plasmid + 1A3/H2B fwd + H2B/LOV rev
  2. LOV plasmid + H2B/LOV fwd + LOV+his/1A3 rev
  • For LOV-H2B construct
  1. H2B-GFP plasmid + 1A3/LOV fwd + LOV/H2B rev
  2. LOV plasmid + LOV/H2B fwd + H2B+his/1A3 rev

Performed table reactions twice: once for those used in H2B-LOV construct, once for those used in LOV-H2B construct

Reagents H2B LOV
Plasmid DNA 0.5 μL 0.5
primer 1 (10 μM) 1.0 1.0
primer 2 (10 μM) 1.0 1.0
2x GoTaq mix 12.5 12.5
dH2O 10.0 10.0
Total 25.0 25.0

PCR program:

  • 95°C, 3 min.
  • [95°C, 30 sec; 57°C, 30 sec.; 72°C, 30 sec.] x35 cycles
  • 72°C, 3 min.
  • 4°C ∞
  • Clean up PCR products using the Zymo Clean and Concentrator kit
  • Be sure to elute using 15 μL dH2O
Construct Product 260 280 260/280 ng/μL
H2B-LOV H2B 1 0.061 0.033 1.863 60.545
H2B-LOV H2B 2 0.056 0.03 1.857 56.22
H2B-LOV LOV 1 0.063 0.033 1.903 62.673
H2B-LOV LOV 2 0.06 0.04 1.85 59.844
LOV-H2B H2B 1 0.072 0.033 1.807 72.381
LOV-H2B H2B 2 0.06 0.036 1.799 59.925
LOV-H2B LOV 1 0.006 0.036 1.849 65.881
LOV-H2B LOV 2 0.065 0.035 1.839 65.285